ms

package module

v0.0.0-...-103bbba Latest Latest Go to latest Published: Dec 2, 2015 License: Apache-2.0 Imports: 0 Imported by: 2

Details

Valid go.mod file

The Go module system was introduced in Go 1.11 and is the official dependency management solution for Go.
Redistributable license

Redistributable licenses place minimal restrictions on how software can be used, modified, and redistributed.
Tagged version

Modules with tagged versions give importers more predictable builds.
Stable version

When a project reaches major version v1 it is considered stable.
Learn more about best practices

Repository

bitbucket.org/proteinspector/ms

Links

Open Source Insights

README ¶

#ms: A Go library to deal with Mass Spectrometry data.

Includes the unthermo library that can read Thermo Finnigan RAW files without external API's, a successor to unfinnigan.

Usable tools:

XIC, prints the mass chromatogram for a given m/z.

linux amd64 executable

windows amd64 executable

macos amd64 executable

Documentation over here

Documentation ¶

Overview ¶

Package ms is a library for mass spectrometry data

Constants ¶

This section is empty.

Variables ¶

This section is empty.

Functions ¶

This section is empty.

Types ¶

type Analyzer ¶

type Analyzer int

Analyzer is the mass analyzer

const (
	ITMS Analyzer = iota
	TQMS
	SQMS
	TOFMS
	FTMS
	Sector
	Undefined
)

The analyzer types are documented in literature

type Peak ¶

type Peak struct {
	Mz float64
	I  float32
}

Peak represents an ion peak

type Scan ¶

type Scan struct {
	Analyzer Analyzer
	MSLevel  uint8
	//Spectrum is a function forcing the read of a spectrum,
	//which is "delayed" for efficiency reasons. If it was not delayed
	//and Spectrum were a data structure, it would always have to
	//be read, which is very expensive. Now if only another property of
	//Scan (cheaper to obtain) is requested, resources are saved.
	Spectrum func(centroided ...bool) Spectrum
	//PrecursorMzs is only filled with mz values at MSx scans.
	PrecursorMzs []float64
	Time         float64
}

Scan represents the peak acquisition event of the mass spectrometer

type Spectrum ¶

type Spectrum []Peak

A Spectrum is a collection of peaks

func (Spectrum) Len ¶

func (a Spectrum) Len() int

func (Spectrum) Less ¶

func (a Spectrum) Less(i, j int) bool

func (Spectrum) Swap ¶

func (a Spectrum) Swap(i, j int)

Source Files ¶

View all Source files

data.go

Directories ¶

Path	Synopsis
unthermo Package unthermo is a library that can read Thermo RAW files.	Package unthermo is a library that can read Thermo RAW files.
tools A set of tools using the unthermo library The labelq tool inserts iTRAQ reporter ions from HCD scans in CID spectra.	A set of tools using the unthermo library The labelq tool inserts iTRAQ reporter ions from HCD scans in CID spectra.

?	: This menu
/	: Search site
f or F	: Jump to
y or Y	: Canonical URL