README
¶
Store
Installation
$ go get github.com/biogo/store/...
Overview
Store provides a number of data store types that are useful for bioinformatic analysis.
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Left-Leaning Red-Black tree
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Interval tree
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k-d tree
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Run-length encoding data store
Getting help
Help or similar requests are preferred on the biogo-user Google Group.
https://groups.google.com/forum/#!forum/biogo-user
Contributing
If you find any bugs, feel free to file an issue on the github issue tracker. Pull requests are welcome, though if they involve changes to API or addition of features, please first open a discussion at the biogo-dev Google Group.
https://groups.google.com/forum/#!forum/biogo-dev
Citing
If you use bíogo, please cite Kortschak and Adelson "bíogo: a simple high-performance bioinformatics toolkit for the Go language", doi:10.1101/005033.
Library Structure and Coding Style
The coding style should be aligned with normal Go idioms as represented in the Go core libraries.
Copyright and License
Copyright ©2011-2013 The bíogo Authors except where otherwise noted. All rights reserved. Use of this source code is governed by a BSD-style license that can be found in the LICENSE file.
The bíogo logo is derived from Bitstream Charter, Copyright ©1989-1992 Bitstream Inc., Cambridge, MA.
BITSTREAM CHARTER is a registered trademark of Bitstream Inc.
Directories
¶
| Path | Synopsis |
|---|---|
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Package interval implements an interval tree based on an augmented Left-Leaning Red Black tree.
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Package interval implements an interval tree based on an augmented Left-Leaning Red Black tree. |
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landscape
Package landscape implements persistence landscape calculation for a set of intervals.
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Package landscape implements persistence landscape calculation for a set of intervals. |
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Package kdtree implements a k-d tree.
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Package kdtree implements a k-d tree. |
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Package llrb implements Left-Leaning Red Black trees as described by Robert Sedgewick.
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Package llrb implements Left-Leaning Red Black trees as described by Robert Sedgewick. |
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Package step implements a step vector type.
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Package step implements a step vector type. |