datatype

package

v1.0.0 Latest Latest Go to latest Published: Aug 18, 2023 License: BSD-3-Clause Imports: 0 Imported by: 0

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Repository

github.com/janelia-flyem/dvid

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Documentation ¶

Overview ¶

Package datatype provides interfaces for arbitrary datatypes supported in DVID. Each datatype implements the interface and handles conversion of its data into the key-value pairs or other base storage elements. Each data type provides a domain-specific HTTP API and possibly command-line actions.

Data types are declared in the main dvid.go file under imports. An example:

import (

// Declare the data types this DVID executable will support
_ "github.com/janelia-flyem/dvid/datatype/imageblk"
_ "github.com/janelia-flyem/dvid/datatype/labelblk"
_ "randomsite.org/datatypes/myfoo"

)

Philosophy note: Rather than creating base packages that handle all sorts of similar data (e.g., uint8, uint16, rgab8, float32, n-dimensional float32), DVID code tries to be as simple as possible even if it means copying and replacing types. This will lend itself to using Go generate versus generics-style of programming. For now, though, it will simplify the code of each package.

Source Files ¶

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doc.go

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Path	Synopsis
annotation Package annotation supports point annotation management and queries.	Package annotation supports point annotation management and queries.
common
downres Package downres provides a system for computing multi-scale 3d arrays given mutations.	Package downres provides a system for computing multi-scale 3d arrays given mutations.
labels Package labels supports label-based data types like labelblk, labelvol, labelsurf, labelsz, etc.	Package labels supports label-based data types like labelblk, labelvol, labelsurf, labelsz, etc.
proto
googlevoxels Package googlevoxels implements DVID support for multi-scale tiles and volumes in XY, XZ, and YZ orientation using the Google BrainMaps API.	Package googlevoxels implements DVID support for multi-scale tiles and volumes in XY, XZ, and YZ orientation using the Google BrainMaps API.
imageblk Package imageblk implements DVID support for image blocks of various formats (uint8, uint16, rgba8).	Package imageblk implements DVID support for image blocks of various formats (uint8, uint16, rgba8).
imagetile Package imagetile implements DVID support for imagetiles in XY, XZ, and YZ orientation.	Package imagetile implements DVID support for imagetiles in XY, XZ, and YZ orientation.
keyvalue Package keyvalue implements DVID support for data using generic key-value.	Package keyvalue implements DVID support for data using generic key-value.
labelarray Package labelarray handles both volumes of label data as well as indexing to quickly find and generate sparse volumes of any particular label.	Package labelarray handles both volumes of label data as well as indexing to quickly find and generate sparse volumes of any particular label.
labelblk Package labelblk supports only label volumes.	Package labelblk supports only label volumes.
labelmap Package labelmap handles both volumes of label data as well as indexing to quickly find and generate sparse volumes of any particular label.	Package labelmap handles both volumes of label data as well as indexing to quickly find and generate sparse volumes of any particular label.
labelsz Package labelsz supports ranking labels by # annotations of each type.	Package labelsz supports ranking labels by # annotations of each type.
labelvol Package labelvol supports label-specific sparse volumes.	Package labelvol supports label-specific sparse volumes.
multichan16 Package multichan16 tailors the voxels data type for 16-bit fluorescent images with multiple channels that can be read from V3D Raw format.	Package multichan16 tailors the voxels data type for 16-bit fluorescent images with multiple channels that can be read from V3D Raw format.
neuronjson This file supports the keyspace for the keyvalue data type.	This file supports the keyspace for the keyvalue data type.
roi Package roi implements DVID support for Region-Of-Interest operations.	Package roi implements DVID support for Region-Of-Interest operations.
tarsupervoxels Package tarsupervoxels implements DVID support for data blobs associated with supervoxels.	Package tarsupervoxels implements DVID support for data blobs associated with supervoxels.