scipipe: Files

Command resequencing

Implementation (work in progress) of the resequencing analysis pipeline used to teach the introductory NGS bioinformatics analysis course at SciLifeLab as described on this page:

Prerequisites: Samtools, BWA, Picard, GATK. You can install all tools except GATK on X/L/K/Ubuntu, with this command:

sudo apt-get install samtools bwa picard-tools

GATK needs to be downloaded and installed manually from:

Package Files


Package main imports 2 packages (graph). Updated 2020-07-02. Refresh now. Tools for package owners.