api: google.golang.org/api/genomics/v1alpha2 Index | Files

package genomics

import "google.golang.org/api/genomics/v1alpha2"

Package genomics provides access to the Genomics API.

For product documentation, see: https://cloud.google.com/genomics

Creating a client

Usage example:

import "google.golang.org/api/genomics/v1alpha2"
...
ctx := context.Background()
genomicsService, err := genomics.NewService(ctx)

In this example, Google Application Default Credentials are used for authentication.

For information on how to create and obtain Application Default Credentials, see https://developers.google.com/identity/protocols/application-default-credentials.

Other authentication options

By default, all available scopes (see "Constants") are used to authenticate. To restrict scopes, use option.WithScopes:

genomicsService, err := genomics.NewService(ctx, option.WithScopes(genomics.GenomicsScope))

To use an API key for authentication (note: some APIs do not support API keys), use option.WithAPIKey:

genomicsService, err := genomics.NewService(ctx, option.WithAPIKey("AIza..."))

To use an OAuth token (e.g., a user token obtained via a three-legged OAuth flow), use option.WithTokenSource:

config := &oauth2.Config{...}
// ...
token, err := config.Exchange(ctx, ...)
genomicsService, err := genomics.NewService(ctx, option.WithTokenSource(config.TokenSource(ctx, token)))

See https://godoc.org/google.golang.org/api/option/ for details on options.

Index

Package Files

genomics-gen.go

Constants

const (
    // View and manage your data across Google Cloud Platform services
    CloudPlatformScope = "https://www.googleapis.com/auth/cloud-platform"

    // View and manage your Google Compute Engine resources
    ComputeScope = "https://www.googleapis.com/auth/compute"

    // View and manage Genomics data
    GenomicsScope = "https://www.googleapis.com/auth/genomics"
)

OAuth2 scopes used by this API.

type CancelOperationRequest Uses

type CancelOperationRequest struct {
}

CancelOperationRequest: The request message for Operations.CancelOperation.

type ComputeEngine Uses

type ComputeEngine struct {
    // DiskNames: The names of the disks that were created for this
    // pipeline.
    DiskNames []string `json:"diskNames,omitempty"`

    // InstanceName: The instance on which the operation is running.
    InstanceName string `json:"instanceName,omitempty"`

    // MachineType: The machine type of the instance.
    MachineType string `json:"machineType,omitempty"`

    // Zone: The availability zone in which the instance resides.
    Zone string `json:"zone,omitempty"`

    // ForceSendFields is a list of field names (e.g. "DiskNames") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "DiskNames") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

ComputeEngine: Describes a Compute Engine resource that is being managed by a running pipeline.

func (*ComputeEngine) MarshalJSON Uses

func (s *ComputeEngine) MarshalJSON() ([]byte, error)

type ContainerKilledEvent Uses

type ContainerKilledEvent struct {
    // ActionId: The numeric ID of the action that started the container.
    ActionId int64 `json:"actionId,omitempty"`

    // ForceSendFields is a list of field names (e.g. "ActionId") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "ActionId") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

ContainerKilledEvent: An event generated when a container is forcibly terminated by the worker. Currently, this only occurs when the container outlives the timeout specified by the user.

func (*ContainerKilledEvent) MarshalJSON Uses

func (s *ContainerKilledEvent) MarshalJSON() ([]byte, error)

type ContainerStartedEvent Uses

type ContainerStartedEvent struct {
    // ActionId: The numeric ID of the action that started this container.
    ActionId int64 `json:"actionId,omitempty"`

    // IpAddress: The public IP address that can be used to connect to the
    // container. This
    // field is only populated when at least one port mapping is present. If
    // the
    // instance was created with a private address, this field will be empty
    // even
    // if port mappings exist.
    IpAddress string `json:"ipAddress,omitempty"`

    // PortMappings: The container-to-host port mappings installed for this
    // container. This
    // set will contain any ports exposed using the `PUBLISH_EXPOSED_PORTS`
    // flag
    // as well as any specified in the `Action` definition.
    PortMappings map[string]int64 `json:"portMappings,omitempty"`

    // ForceSendFields is a list of field names (e.g. "ActionId") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "ActionId") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

ContainerStartedEvent: An event generated when a container starts.

func (*ContainerStartedEvent) MarshalJSON Uses

func (s *ContainerStartedEvent) MarshalJSON() ([]byte, error)

type ContainerStoppedEvent Uses

type ContainerStoppedEvent struct {
    // ActionId: The numeric ID of the action that started this container.
    ActionId int64 `json:"actionId,omitempty"`

    // ExitStatus: The exit status of the container.
    ExitStatus int64 `json:"exitStatus,omitempty"`

    // Stderr: The tail end of any content written to standard error by the
    // container.
    // If the content emits large amounts of debugging noise or
    // contains
    // sensitive information, you can prevent the content from being printed
    // by
    // setting the `DISABLE_STANDARD_ERROR_CAPTURE` flag.
    //
    // Note that only a small amount of the end of the stream is captured
    // here.
    // The entire stream is stored in the `/google/logs` directory mounted
    // into
    // each action, and can be copied off the machine as described
    // elsewhere.
    Stderr string `json:"stderr,omitempty"`

    // ForceSendFields is a list of field names (e.g. "ActionId") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "ActionId") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

ContainerStoppedEvent: An event generated when a container exits.

func (*ContainerStoppedEvent) MarshalJSON Uses

func (s *ContainerStoppedEvent) MarshalJSON() ([]byte, error)

type ControllerConfig Uses

type ControllerConfig struct {
    Cmd string `json:"cmd,omitempty"`

    Disks map[string]string `json:"disks,omitempty"`

    GcsLogPath string `json:"gcsLogPath,omitempty"`

    GcsSinks map[string]RepeatedString `json:"gcsSinks,omitempty"`

    GcsSources map[string]RepeatedString `json:"gcsSources,omitempty"`

    Image string `json:"image,omitempty"`

    MachineType string `json:"machineType,omitempty"`

    Vars map[string]string `json:"vars,omitempty"`

    // ServerResponse contains the HTTP response code and headers from the
    // server.
    googleapi.ServerResponse `json:"-"`

    // ForceSendFields is a list of field names (e.g. "Cmd") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Cmd") to include in API
    // requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

ControllerConfig: Stores the information that the controller will fetch from the server in order to run. Should only be used by VMs created by the Pipelines Service and not by end users.

func (*ControllerConfig) MarshalJSON Uses

func (s *ControllerConfig) MarshalJSON() ([]byte, error)

type DelayedEvent Uses

type DelayedEvent struct {
    // Cause: A textual description of the cause of the delay. The string
    // can change
    // without notice because it is often generated by another service (such
    // as
    // Compute Engine).
    Cause string `json:"cause,omitempty"`

    // Metrics: If the delay was caused by a resource shortage, this field
    // lists the
    // Compute Engine metrics that are preventing this operation from
    // running
    // (for example, `CPUS` or `INSTANCES`). If the particular metric is
    // not
    // known, a single `UNKNOWN` metric will be present.
    Metrics []string `json:"metrics,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Cause") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Cause") to include in API
    // requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

DelayedEvent: An event generated whenever a resource limitation or transient error delays execution of a pipeline that was otherwise ready to run.

func (*DelayedEvent) MarshalJSON Uses

func (s *DelayedEvent) MarshalJSON() ([]byte, error)

type Disk Uses

type Disk struct {
    // AutoDelete: Deprecated. Disks created by the Pipelines API will be
    // deleted at the end
    // of the pipeline run, regardless of what this field is set to.
    AutoDelete bool `json:"autoDelete,omitempty"`

    // MountPoint: Required at create time and cannot be overridden at run
    // time.
    // Specifies the path in the docker container where files on
    // this disk should be located. For example, if `mountPoint`
    // is `/mnt/disk`, and the parameter has `localPath`
    // `inputs/file.txt`, the docker container can access the data
    // at
    // `/mnt/disk/inputs/file.txt`.
    MountPoint string `json:"mountPoint,omitempty"`

    // Name: Required. The name of the disk that can be used in the
    // pipeline
    // parameters. Must be 1 - 63 characters.
    // The name "boot" is reserved for system use.
    Name string `json:"name,omitempty"`

    // ReadOnly: Specifies how a sourced-base persistent disk will be
    // mounted.
    // See
    // https://cloud.google.com/compute/docs/disks/persistent-disks#use_m
    // ulti_instances
    // for more details.
    // Can only be set at create time.
    ReadOnly bool `json:"readOnly,omitempty"`

    // SizeGb: The size of the disk. Defaults to 500 (GB).
    // This field is not applicable for local SSD.
    SizeGb int64 `json:"sizeGb,omitempty"`

    // Source: The full or partial URL of the persistent disk to attach.
    // See
    // https://cloud.google.com/compute/docs/reference/latest/instances#r
    // esource
    // and
    // https://cloud.google.com/compute/docs/disks/persistent-dis
    // ks#snapshots
    // for more details.
    Source string `json:"source,omitempty"`

    // Type: Required. The type of the disk to create.
    //
    // Possible values:
    //   "TYPE_UNSPECIFIED" - Default disk type. Use one of the other
    // options below.
    //   "PERSISTENT_HDD" - Specifies a Google Compute Engine persistent
    // hard disk. See
    // https://cloud.google.com/compute/docs/disks/#pdspecs for details.
    //   "PERSISTENT_SSD" - Specifies a Google Compute Engine persistent
    // solid-state disk.
    // See
    // https://cloud.google.com/compute/docs/disks/#pdspecs for details.
    //   "LOCAL_SSD" - Specifies a Google Compute Engine local SSD.
    // See https://cloud.google.com/compute/docs/disks/local-ssd for
    // details.
    Type string `json:"type,omitempty"`

    // ForceSendFields is a list of field names (e.g. "AutoDelete") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "AutoDelete") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

Disk: A Google Compute Engine disk resource specification.

func (*Disk) MarshalJSON Uses

func (s *Disk) MarshalJSON() ([]byte, error)

type DockerExecutor Uses

type DockerExecutor struct {
    // Cmd: Required. The command or newline delimited script to run. The
    // command
    // string will be executed within a bash shell.
    //
    // If the command exits with a non-zero exit code, output
    // parameter
    // de-localization will be skipped and the pipeline operation's
    // `error` field will be populated.
    //
    // Maximum command string length is 16384.
    Cmd string `json:"cmd,omitempty"`

    // ImageName: Required. Image name from either Docker Hub or Google
    // Container Registry.
    // Users that run pipelines must have READ access to the image.
    ImageName string `json:"imageName,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Cmd") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Cmd") to include in API
    // requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

DockerExecutor: The Docker execuctor specification.

func (*DockerExecutor) MarshalJSON Uses

func (s *DockerExecutor) MarshalJSON() ([]byte, error)

type Empty Uses

type Empty struct {
    // ServerResponse contains the HTTP response code and headers from the
    // server.
    googleapi.ServerResponse `json:"-"`
}

Empty: A generic empty message that you can re-use to avoid defining duplicated empty messages in your APIs. A typical example is to use it as the request or the response type of an API method. For instance:

service Foo {
  rpc Bar(google.protobuf.Empty) returns

(google.protobuf.Empty);

}

The JSON representation for `Empty` is empty JSON object `{}`.

type Event Uses

type Event struct {
    // Description: A human-readable description of the event. Note that
    // these strings can
    // change at any time without notice. Any application logic must use
    // the
    // information in the `details` field.
    Description string `json:"description,omitempty"`

    // Details: Machine-readable details about the event.
    Details googleapi.RawMessage `json:"details,omitempty"`

    // Timestamp: The time at which the event occurred.
    Timestamp string `json:"timestamp,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Description") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Description") to include
    // in API requests with the JSON null value. By default, fields with
    // empty values are omitted from API requests. However, any field with
    // an empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

Event: Carries information about events that occur during pipeline execution.

func (*Event) MarshalJSON Uses

func (s *Event) MarshalJSON() ([]byte, error)

type FailedEvent Uses

type FailedEvent struct {
    // Cause: The human-readable description of the cause of the failure.
    Cause string `json:"cause,omitempty"`

    // Code: The Google standard error code that best describes this
    // failure.
    //
    // Possible values:
    //   "OK" - Not an error; returned on success
    //
    // HTTP Mapping: 200 OK
    //   "CANCELLED" - The operation was cancelled, typically by the
    // caller.
    //
    // HTTP Mapping: 499 Client Closed Request
    //   "UNKNOWN" - Unknown error.  For example, this error may be returned
    // when
    // a `Status` value received from another address space belongs to
    // an error space that is not known in this address space.  Also
    // errors raised by APIs that do not return enough error information
    // may be converted to this error.
    //
    // HTTP Mapping: 500 Internal Server Error
    //   "INVALID_ARGUMENT" - The client specified an invalid argument.
    // Note that this differs
    // from `FAILED_PRECONDITION`.  `INVALID_ARGUMENT` indicates
    // arguments
    // that are problematic regardless of the state of the system
    // (e.g., a malformed file name).
    //
    // HTTP Mapping: 400 Bad Request
    //   "DEADLINE_EXCEEDED" - The deadline expired before the operation
    // could complete. For operations
    // that change the state of the system, this error may be returned
    // even if the operation has completed successfully.  For example,
    // a
    // successful response from a server could have been delayed long
    // enough for the deadline to expire.
    //
    // HTTP Mapping: 504 Gateway Timeout
    //   "NOT_FOUND" - Some requested entity (e.g., file or directory) was
    // not found.
    //
    // Note to server developers: if a request is denied for an entire
    // class
    // of users, such as gradual feature rollout or undocumented
    // whitelist,
    // `NOT_FOUND` may be used. If a request is denied for some users
    // within
    // a class of users, such as user-based access control,
    // `PERMISSION_DENIED`
    // must be used.
    //
    // HTTP Mapping: 404 Not Found
    //   "ALREADY_EXISTS" - The entity that a client attempted to create
    // (e.g., file or directory)
    // already exists.
    //
    // HTTP Mapping: 409 Conflict
    //   "PERMISSION_DENIED" - The caller does not have permission to
    // execute the specified
    // operation. `PERMISSION_DENIED` must not be used for rejections
    // caused by exhausting some resource (use `RESOURCE_EXHAUSTED`
    // instead for those errors). `PERMISSION_DENIED` must not be
    // used if the caller can not be identified (use
    // `UNAUTHENTICATED`
    // instead for those errors). This error code does not imply the
    // request is valid or the requested entity exists or satisfies
    // other pre-conditions.
    //
    // HTTP Mapping: 403 Forbidden
    //   "UNAUTHENTICATED" - The request does not have valid authentication
    // credentials for the
    // operation.
    //
    // HTTP Mapping: 401 Unauthorized
    //   "RESOURCE_EXHAUSTED" - Some resource has been exhausted, perhaps a
    // per-user quota, or
    // perhaps the entire file system is out of space.
    //
    // HTTP Mapping: 429 Too Many Requests
    //   "FAILED_PRECONDITION" - The operation was rejected because the
    // system is not in a state
    // required for the operation's execution.  For example, the
    // directory
    // to be deleted is non-empty, an rmdir operation is applied to
    // a non-directory, etc.
    //
    // Service implementors can use the following guidelines to
    // decide
    // between `FAILED_PRECONDITION`, `ABORTED`, and `UNAVAILABLE`:
    //  (a) Use `UNAVAILABLE` if the client can retry just the failing
    // call.
    //  (b) Use `ABORTED` if the client should retry at a higher level
    //      (e.g., when a client-specified test-and-set fails, indicating
    // the
    //      client should restart a read-modify-write sequence).
    //  (c) Use `FAILED_PRECONDITION` if the client should not retry until
    //      the system state has been explicitly fixed.  E.g., if an
    // "rmdir"
    //      fails because the directory is non-empty, `FAILED_PRECONDITION`
    //      should be returned since the client should not retry unless
    //      the files are deleted from the directory.
    //
    // HTTP Mapping: 400 Bad Request
    //   "ABORTED" - The operation was aborted, typically due to a
    // concurrency issue such as
    // a sequencer check failure or transaction abort.
    //
    // See the guidelines above for deciding between
    // `FAILED_PRECONDITION`,
    // `ABORTED`, and `UNAVAILABLE`.
    //
    // HTTP Mapping: 409 Conflict
    //   "OUT_OF_RANGE" - The operation was attempted past the valid range.
    // E.g., seeking or
    // reading past end-of-file.
    //
    // Unlike `INVALID_ARGUMENT`, this error indicates a problem that may
    // be fixed if the system state changes. For example, a 32-bit
    // file
    // system will generate `INVALID_ARGUMENT` if asked to read at an
    // offset that is not in the range [0,2^32-1], but it will
    // generate
    // `OUT_OF_RANGE` if asked to read from an offset past the current
    // file size.
    //
    // There is a fair bit of overlap between `FAILED_PRECONDITION`
    // and
    // `OUT_OF_RANGE`.  We recommend using `OUT_OF_RANGE` (the more
    // specific
    // error) when it applies so that callers who are iterating through
    // a space can easily look for an `OUT_OF_RANGE` error to detect
    // when
    // they are done.
    //
    // HTTP Mapping: 400 Bad Request
    //   "UNIMPLEMENTED" - The operation is not implemented or is not
    // supported/enabled in this
    // service.
    //
    // HTTP Mapping: 501 Not Implemented
    //   "INTERNAL" - Internal errors.  This means that some invariants
    // expected by the
    // underlying system have been broken.  This error code is reserved
    // for serious errors.
    //
    // HTTP Mapping: 500 Internal Server Error
    //   "UNAVAILABLE" - The service is currently unavailable.  This is most
    // likely a
    // transient condition, which can be corrected by retrying with
    // a backoff. Note that it is not always safe to retry
    // non-idempotent operations.
    //
    // See the guidelines above for deciding between
    // `FAILED_PRECONDITION`,
    // `ABORTED`, and `UNAVAILABLE`.
    //
    // HTTP Mapping: 503 Service Unavailable
    //   "DATA_LOSS" - Unrecoverable data loss or corruption.
    //
    // HTTP Mapping: 500 Internal Server Error
    Code string `json:"code,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Cause") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Cause") to include in API
    // requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

FailedEvent: An event generated when the execution of a pipeline has failed. Note that other events can continue to occur after this event.

func (*FailedEvent) MarshalJSON Uses

func (s *FailedEvent) MarshalJSON() ([]byte, error)

type ListOperationsResponse Uses

type ListOperationsResponse struct {
    // NextPageToken: The standard List next-page token.
    NextPageToken string `json:"nextPageToken,omitempty"`

    // Operations: A list of operations that matches the specified filter in
    // the request.
    Operations []*Operation `json:"operations,omitempty"`

    // ServerResponse contains the HTTP response code and headers from the
    // server.
    googleapi.ServerResponse `json:"-"`

    // ForceSendFields is a list of field names (e.g. "NextPageToken") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "NextPageToken") to include
    // in API requests with the JSON null value. By default, fields with
    // empty values are omitted from API requests. However, any field with
    // an empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

ListOperationsResponse: The response message for Operations.ListOperations.

func (*ListOperationsResponse) MarshalJSON Uses

func (s *ListOperationsResponse) MarshalJSON() ([]byte, error)

type ListPipelinesResponse Uses

type ListPipelinesResponse struct {
    // NextPageToken: The token to use to get the next page of results.
    NextPageToken string `json:"nextPageToken,omitempty"`

    // Pipelines: The matched pipelines.
    Pipelines []*Pipeline `json:"pipelines,omitempty"`

    // ServerResponse contains the HTTP response code and headers from the
    // server.
    googleapi.ServerResponse `json:"-"`

    // ForceSendFields is a list of field names (e.g. "NextPageToken") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "NextPageToken") to include
    // in API requests with the JSON null value. By default, fields with
    // empty values are omitted from API requests. However, any field with
    // an empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

ListPipelinesResponse: The response of ListPipelines. Contains at most `pageSize` pipelines. If it contains `pageSize` pipelines, and more pipelines exist, then `nextPageToken` will be populated and should be used as the `pageToken` argument to a subsequent ListPipelines request.

func (*ListPipelinesResponse) MarshalJSON Uses

func (s *ListPipelinesResponse) MarshalJSON() ([]byte, error)

type LocalCopy Uses

type LocalCopy struct {
    // Disk: Required. The name of the disk where this parameter is
    // located. Can be the name of one of the disks specified in
    // the
    // Resources field, or "boot", which represents the Docker
    // instance's boot disk and has a mount point of `/`.
    Disk string `json:"disk,omitempty"`

    // Path: Required. The path within the user's docker container
    // where
    // this input should be localized to and from, relative to the
    // specified
    // disk's mount point. For example: file.txt,
    Path string `json:"path,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Disk") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Disk") to include in API
    // requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

LocalCopy: LocalCopy defines how a remote file should be copied to and from the VM.

func (*LocalCopy) MarshalJSON Uses

func (s *LocalCopy) MarshalJSON() ([]byte, error)

type LoggingOptions Uses

type LoggingOptions struct {
    // GcsPath: The location in Google Cloud Storage to which the pipeline
    // logs
    // will be copied. Can be specified as a fully qualified directory
    // path, in which case logs will be output with a unique identifier
    // as the filename in that directory, or as a fully specified
    // path,
    // which must end in `.log`, in which case that path will be
    // used, and the user must ensure that logs are not
    // overwritten. Stdout and stderr logs from the run are also
    // generated and output as `-stdout.log` and `-stderr.log`.
    GcsPath string `json:"gcsPath,omitempty"`

    // ForceSendFields is a list of field names (e.g. "GcsPath") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "GcsPath") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

LoggingOptions: The logging options for the pipeline run.

func (*LoggingOptions) MarshalJSON Uses

func (s *LoggingOptions) MarshalJSON() ([]byte, error)

type Operation Uses

type Operation struct {
    // Done: If the value is `false`, it means the operation is still in
    // progress.
    // If `true`, the operation is completed, and either `error` or
    // `response` is
    // available.
    Done bool `json:"done,omitempty"`

    // Error: The error result of the operation in case of failure or
    // cancellation.
    Error *Status `json:"error,omitempty"`

    // Metadata: An OperationMetadata or Metadata object. This will always
    // be returned with the Operation.
    Metadata googleapi.RawMessage `json:"metadata,omitempty"`

    // Name: The server-assigned name, which is only unique within the same
    // service that originally returns it. For example:
    // `operations/CJHU7Oi_ChDrveSpBRjfuL-qzoWAgEw`
    Name string `json:"name,omitempty"`

    // Response: An Empty object.
    Response googleapi.RawMessage `json:"response,omitempty"`

    // ServerResponse contains the HTTP response code and headers from the
    // server.
    googleapi.ServerResponse `json:"-"`

    // ForceSendFields is a list of field names (e.g. "Done") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Done") to include in API
    // requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

Operation: This resource represents a long-running operation that is the result of a network API call.

func (*Operation) MarshalJSON Uses

func (s *Operation) MarshalJSON() ([]byte, error)

type OperationEvent Uses

type OperationEvent struct {
    // Description: Required description of event.
    Description string `json:"description,omitempty"`

    // EndTime: Optional time of when event finished. An event can have a
    // start time and no
    // finish time. If an event has a finish time, there must be a start
    // time.
    EndTime string `json:"endTime,omitempty"`

    // StartTime: Optional time of when event started.
    StartTime string `json:"startTime,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Description") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Description") to include
    // in API requests with the JSON null value. By default, fields with
    // empty values are omitted from API requests. However, any field with
    // an empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

OperationEvent: An event that occurred during an Operation.

func (*OperationEvent) MarshalJSON Uses

func (s *OperationEvent) MarshalJSON() ([]byte, error)

type OperationMetadata Uses

type OperationMetadata struct {
    // ClientId: This field is deprecated. Use `labels` instead. Optionally
    // provided by the
    // caller when submitting the request that creates the operation.
    ClientId string `json:"clientId,omitempty"`

    // CreateTime: The time at which the job was submitted to the Genomics
    // service.
    CreateTime string `json:"createTime,omitempty"`

    // EndTime: The time at which the job stopped running.
    EndTime string `json:"endTime,omitempty"`

    // Events: Optional event messages that were generated during the job's
    // execution.
    // This also contains any warnings that were generated during import
    // or export.
    Events []*OperationEvent `json:"events,omitempty"`

    // Labels: Optionally provided by the caller when submitting the request
    // that creates
    // the operation.
    Labels map[string]string `json:"labels,omitempty"`

    // ProjectId: The Google Cloud Project in which the job is scoped.
    ProjectId string `json:"projectId,omitempty"`

    // Request: The original request that started the operation. Note that
    // this will be in
    // current version of the API. If the operation was started with v1beta2
    // API
    // and a GetOperation is performed on v1 API, a v1 request will be
    // returned.
    Request googleapi.RawMessage `json:"request,omitempty"`

    // RuntimeMetadata: Runtime metadata on this Operation.
    RuntimeMetadata googleapi.RawMessage `json:"runtimeMetadata,omitempty"`

    // StartTime: The time at which the job began to run.
    StartTime string `json:"startTime,omitempty"`

    // ForceSendFields is a list of field names (e.g. "ClientId") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "ClientId") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

OperationMetadata: Metadata describing an Operation.

func (*OperationMetadata) MarshalJSON Uses

func (s *OperationMetadata) MarshalJSON() ([]byte, error)

type OperationsCancelCall Uses

type OperationsCancelCall struct {
    // contains filtered or unexported fields
}

func (*OperationsCancelCall) Context Uses

func (c *OperationsCancelCall) Context(ctx context.Context) *OperationsCancelCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsCancelCall) Do Uses

func (c *OperationsCancelCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.operations.cancel" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsCancelCall) Fields Uses

func (c *OperationsCancelCall) Fields(s ...googleapi.Field) *OperationsCancelCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*OperationsCancelCall) Header Uses

func (c *OperationsCancelCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type OperationsGetCall Uses

type OperationsGetCall struct {
    // contains filtered or unexported fields
}

func (*OperationsGetCall) Context Uses

func (c *OperationsGetCall) Context(ctx context.Context) *OperationsGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsGetCall) Do Uses

func (c *OperationsGetCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.operations.get" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsGetCall) Fields Uses

func (c *OperationsGetCall) Fields(s ...googleapi.Field) *OperationsGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*OperationsGetCall) Header Uses

func (c *OperationsGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*OperationsGetCall) IfNoneMatch Uses

func (c *OperationsGetCall) IfNoneMatch(entityTag string) *OperationsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type OperationsListCall Uses

type OperationsListCall struct {
    // contains filtered or unexported fields
}

func (*OperationsListCall) Context Uses

func (c *OperationsListCall) Context(ctx context.Context) *OperationsListCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsListCall) Do Uses

func (c *OperationsListCall) Do(opts ...googleapi.CallOption) (*ListOperationsResponse, error)

Do executes the "genomics.operations.list" call. Exactly one of *ListOperationsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ListOperationsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsListCall) Fields Uses

func (c *OperationsListCall) Fields(s ...googleapi.Field) *OperationsListCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*OperationsListCall) Filter Uses

func (c *OperationsListCall) Filter(filter string) *OperationsListCall

Filter sets the optional parameter "filter": A string for filtering Operations. In v2alpha1, the following filter fields are supported:

* createTime: The time this job was created * events: The set of event (names) that have occurred while running

the pipeline.  The : operator can be used to determine if a
particular event has occurred.

* error: If the pipeline is running, this value is NULL. Once the

pipeline finishes, the value is the standard Google error code.

* labels.key or labels."key with space" where key is a label key. * done: If the pipeline is running, this value is false. Once the

pipeline finishes, the value is true.

In v1 and v1alpha2, the following filter fields are supported:

* projectId: Required. Corresponds to

OperationMetadata.projectId.

* createTime: The time this job was created, in seconds from the

[epoch](http://en.wikipedia.org/wiki/Unix_time). Can use `>=`

and/or `<=`

operators.

* status&#58; Can be `RUNNING`, `SUCCESS`, `FAILURE`, or `CANCELED`. Only

one status may be specified.

* labels.key where key is a label key.

Examples&#58;

* `projectId = my-project AND createTime >= 1432140000` * `projectId = my-project AND createTime >= 1432140000 AND createTime <= 1432150000 AND status = RUNNING` * `projectId = my-project AND labels.color = *` * `projectId = my-project AND labels.color = red`

func (*OperationsListCall) Header Uses

func (c *OperationsListCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*OperationsListCall) IfNoneMatch Uses

func (c *OperationsListCall) IfNoneMatch(entityTag string) *OperationsListCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*OperationsListCall) PageSize Uses

func (c *OperationsListCall) PageSize(pageSize int64) *OperationsListCall

PageSize sets the optional parameter "pageSize": The maximum number of results to return. The maximum value is 256.

func (*OperationsListCall) PageToken Uses

func (c *OperationsListCall) PageToken(pageToken string) *OperationsListCall

PageToken sets the optional parameter "pageToken": The standard list page token.

func (*OperationsListCall) Pages Uses

func (c *OperationsListCall) Pages(ctx context.Context, f func(*ListOperationsResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type OperationsService Uses

type OperationsService struct {
    // contains filtered or unexported fields
}

func NewOperationsService Uses

func NewOperationsService(s *Service) *OperationsService

func (*OperationsService) Cancel Uses

func (r *OperationsService) Cancel(name string, canceloperationrequest *CancelOperationRequest) *OperationsCancelCall

Cancel: Starts asynchronous cancellation on a long-running operation. The server makes a best effort to cancel the operation, but success is not guaranteed. Clients may use Operations.GetOperation or Operations.ListOperations to check whether the cancellation succeeded or the operation completed despite cancellation. Authorization requires the following [Google IAM](https://cloud.google.com/iam) permission&#58;

* `genomics.operations.cancel`

func (*OperationsService) Get Uses

func (r *OperationsService) Get(name string) *OperationsGetCall

Get: Gets the latest state of a long-running operation. Clients can use this method to poll the operation result at intervals as recommended by the API service. Authorization requires the following [Google IAM](https://cloud.google.com/iam) permission&#58;

* `genomics.operations.get`

func (*OperationsService) List Uses

func (r *OperationsService) List(name string) *OperationsListCall

List: Lists operations that match the specified filter in the request. Authorization requires the following [Google IAM](https://cloud.google.com/iam) permission&#58;

* `genomics.operations.list`

type Pipeline Uses

type Pipeline struct {
    // Description: User-specified description.
    Description string `json:"description,omitempty"`

    // Docker: Specifies the docker run information.
    Docker *DockerExecutor `json:"docker,omitempty"`

    // InputParameters: Input parameters of the pipeline.
    InputParameters []*PipelineParameter `json:"inputParameters,omitempty"`

    // Name: Required. A user specified pipeline name that does not have to
    // be unique.
    // This name can be used for filtering Pipelines in ListPipelines.
    Name string `json:"name,omitempty"`

    // OutputParameters: Output parameters of the pipeline.
    OutputParameters []*PipelineParameter `json:"outputParameters,omitempty"`

    // PipelineId: Unique pipeline id that is generated by the service when
    // CreatePipeline
    // is called. Cannot be specified in the Pipeline used in
    // the
    // CreatePipelineRequest, and will be populated in the response
    // to
    // CreatePipeline and all subsequent Get and List calls. Indicates that
    // the
    // service has registered this pipeline.
    PipelineId string `json:"pipelineId,omitempty"`

    // ProjectId: Required. The project in which to create the pipeline. The
    // caller must have
    // WRITE access.
    ProjectId string `json:"projectId,omitempty"`

    // Resources: Required. Specifies resource requirements for the pipeline
    // run.
    // Required fields:
    //
    // *
    // minimumCpuCores
    //
    // *
    // minimumRamGb
    Resources *PipelineResources `json:"resources,omitempty"`

    // ServerResponse contains the HTTP response code and headers from the
    // server.
    googleapi.ServerResponse `json:"-"`

    // ForceSendFields is a list of field names (e.g. "Description") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Description") to include
    // in API requests with the JSON null value. By default, fields with
    // empty values are omitted from API requests. However, any field with
    // an empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

Pipeline: The pipeline object. Represents a transformation from a set of input parameters to a set of output parameters. The transformation is defined as a docker image and command to run within that image. Each pipeline is run on a Google Compute Engine VM. A pipeline can be created with the `create` method and then later run with the `run` method, or a pipeline can be defined and run all at once with the `run` method.

func (*Pipeline) MarshalJSON Uses

func (s *Pipeline) MarshalJSON() ([]byte, error)

type PipelineParameter Uses

type PipelineParameter struct {
    // DefaultValue: The default value for this parameter. Can be overridden
    // at runtime.
    // If `localCopy` is present, then this must be a Google Cloud Storage
    // path
    // beginning with `gs://`.
    DefaultValue string `json:"defaultValue,omitempty"`

    // Description: Human-readable description.
    Description string `json:"description,omitempty"`

    // LocalCopy: If present, this parameter is marked for copying to and
    // from the VM.
    // `LocalCopy` indicates where on the VM the file should be. The
    // value
    // given to this parameter (either at runtime or using
    // `defaultValue`)
    // must be the remote path where the file should be.
    LocalCopy *LocalCopy `json:"localCopy,omitempty"`

    // Name: Required. Name of the parameter - the pipeline runner uses this
    // string
    // as the key to the input and output maps in RunPipeline.
    Name string `json:"name,omitempty"`

    // ForceSendFields is a list of field names (e.g. "DefaultValue") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "DefaultValue") to include
    // in API requests with the JSON null value. By default, fields with
    // empty values are omitted from API requests. However, any field with
    // an empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

PipelineParameter: Parameters facilitate setting and delivering data into the pipeline's execution environment. They are defined at create time, with optional defaults, and can be overridden at run time.

If `localCopy` is unset, then the parameter specifies a string that is passed as-is into the pipeline, as the value of the environment variable with the given name. A default value can be optionally specified at create time. The default can be overridden at run time using the inputs map. If no default is given, a value must be supplied at runtime.

If `localCopy` is defined, then the parameter specifies a data source or sink, both in Google Cloud Storage and on the Docker container where the pipeline computation is run. The service account associated with the Pipeline (by default the project's Compute Engine service account) must have access to the Google Cloud Storage paths.

At run time, the Google Cloud Storage paths can be overridden if a default was provided at create time, or must be set otherwise. The pipeline runner should add a key/value pair to either the inputs or outputs map. The indicated data copies will be carried out before/after pipeline execution, just as if the corresponding arguments were provided to `gsutil cp`.

For example: Given the following `PipelineParameter`, specified in the `inputParameters` list:

“` {name: "input_file", localCopy: {path: "file.txt", disk: "pd1"}} “`

where `disk` is defined in the `PipelineResources` object as:

“` {name: "pd1", mountPoint: "/mnt/disk/"} “`

We create a disk named `pd1`, mount it on the host VM, and map `/mnt/pd1` to `/mnt/disk` in the docker container. At runtime, an entry for `input_file` would be required in the inputs map, such as:

“`

inputs["input_file"] = "gs://my-bucket/bar.txt"

“`

This would generate the following gsutil call:

“`

gsutil cp gs://my-bucket/bar.txt /mnt/pd1/file.txt

“`

The file `/mnt/pd1/file.txt` maps to `/mnt/disk/file.txt` in the Docker container. Acceptable paths are:

<table>

<thead>
  <tr><th>Google Cloud storage path</th><th>Local path</th></tr>
</thead>
<tbody>
  <tr><td>file</td><td>file</td></tr>
  <tr><td>glob</td><td>directory</td></tr>
</tbody>

</table>

For outputs, the direction of the copy is reversed:

“`

gsutil cp /mnt/disk/file.txt gs://my-bucket/bar.txt

“`

Acceptable paths are:

<table>

<thead>
  <tr><th>Local path</th><th>Google Cloud Storage path</th></tr>
</thead>
<tbody>
  <tr><td>file</td><td>file</td></tr>
  <tr>
    <td>file</td>
    <td>directory - directory must already exist</td>
  </tr>
  <tr>
    <td>glob</td>
    <td>directory - directory will be created if it doesn't

exist</td></tr>

</tbody>

</table>

One restriction due to docker limitations, is that for outputs that are found on the boot disk, the local path cannot be a glob and must be a file.

func (*PipelineParameter) MarshalJSON Uses

func (s *PipelineParameter) MarshalJSON() ([]byte, error)

type PipelineResources Uses

type PipelineResources struct {
    // AcceleratorCount: Optional. The number of accelerators of the
    // specified type to attach.
    // By specifying this parameter, you will download and install the
    // following
    // third-party software onto your managed Compute Engine
    // instances:
    // NVIDIA® Tesla® drivers and NVIDIA® CUDA toolkit.
    AcceleratorCount int64 `json:"acceleratorCount,omitempty,string"`

    // AcceleratorType: Optional. The Compute Engine defined accelerator
    // type.
    // By specifying this parameter, you will download and install the
    // following
    // third-party software onto your managed Compute Engine instances:
    // NVIDIA®
    // Tesla® drivers and NVIDIA® CUDA toolkit.
    // Please see https://cloud.google.com/compute/docs/gpus/ for a list
    // of
    // available accelerator types.
    AcceleratorType string `json:"acceleratorType,omitempty"`

    // BootDiskSizeGb: The size of the boot disk. Defaults to 10 (GB).
    BootDiskSizeGb int64 `json:"bootDiskSizeGb,omitempty"`

    // Disks: Disks to attach.
    Disks []*Disk `json:"disks,omitempty"`

    // MinimumCpuCores: The minimum number of cores to use. Defaults to 1.
    MinimumCpuCores int64 `json:"minimumCpuCores,omitempty"`

    // MinimumRamGb: The minimum amount of RAM to use. Defaults to 3.75 (GB)
    MinimumRamGb float64 `json:"minimumRamGb,omitempty"`

    // NoAddress: Whether to assign an external IP to the instance. This is
    // an experimental
    // feature that may go away. Defaults to false.
    // Corresponds to `--no_address` flag for [gcloud compute instances
    // create]
    // (https://cloud.google.com/sdk/gcloud/reference/compute/instanc
    // es/create).
    // In order to use this, must be true for both create time and run
    // time.
    // Cannot be true at run time if false at create time. If you need to
    // ssh into
    // a private IP VM for debugging, you can ssh to a public VM and then
    // ssh into
    // the private VM's Internal IP.  If noAddress is set, this pipeline run
    // may
    // only load docker images from Google Container Registry and not Docker
    // Hub.
    // Before using this, you must
    // [configure access to Google services from
    // internal
    // IPs](https://cloud.google.com/compute/docs/configure-private-
    // google-access#configuring_access_to_google_services_from_internal_ips)
    // .
    NoAddress bool `json:"noAddress,omitempty"`

    // Preemptible: Whether to use preemptible VMs. Defaults to `false`. In
    // order to use this,
    // must be true for both create time and run time. Cannot be true at run
    // time
    // if false at create time.
    Preemptible bool `json:"preemptible,omitempty"`

    // Zones: List of Google Compute Engine availability zones to which
    // resource
    // creation will restricted. If empty, any zone may be chosen.
    Zones []string `json:"zones,omitempty"`

    // ForceSendFields is a list of field names (e.g. "AcceleratorCount") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "AcceleratorCount") to
    // include in API requests with the JSON null value. By default, fields
    // with empty values are omitted from API requests. However, any field
    // with an empty value appearing in NullFields will be sent to the
    // server as null. It is an error if a field in this list has a
    // non-empty value. This may be used to include null fields in Patch
    // requests.
    NullFields []string `json:"-"`
}

PipelineResources: The system resources for the pipeline run.

func (*PipelineResources) MarshalJSON Uses

func (s *PipelineResources) MarshalJSON() ([]byte, error)

func (*PipelineResources) UnmarshalJSON Uses

func (s *PipelineResources) UnmarshalJSON(data []byte) error

type PipelinesCreateCall Uses

type PipelinesCreateCall struct {
    // contains filtered or unexported fields
}

func (*PipelinesCreateCall) Context Uses

func (c *PipelinesCreateCall) Context(ctx context.Context) *PipelinesCreateCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesCreateCall) Do Uses

func (c *PipelinesCreateCall) Do(opts ...googleapi.CallOption) (*Pipeline, error)

Do executes the "genomics.pipelines.create" call. Exactly one of *Pipeline or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Pipeline.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesCreateCall) Fields Uses

func (c *PipelinesCreateCall) Fields(s ...googleapi.Field) *PipelinesCreateCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesCreateCall) Header Uses

func (c *PipelinesCreateCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type PipelinesDeleteCall Uses

type PipelinesDeleteCall struct {
    // contains filtered or unexported fields
}

func (*PipelinesDeleteCall) Context Uses

func (c *PipelinesDeleteCall) Context(ctx context.Context) *PipelinesDeleteCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesDeleteCall) Do Uses

func (c *PipelinesDeleteCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.pipelines.delete" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesDeleteCall) Fields Uses

func (c *PipelinesDeleteCall) Fields(s ...googleapi.Field) *PipelinesDeleteCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesDeleteCall) Header Uses

func (c *PipelinesDeleteCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type PipelinesGetCall Uses

type PipelinesGetCall struct {
    // contains filtered or unexported fields
}

func (*PipelinesGetCall) Context Uses

func (c *PipelinesGetCall) Context(ctx context.Context) *PipelinesGetCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesGetCall) Do Uses

func (c *PipelinesGetCall) Do(opts ...googleapi.CallOption) (*Pipeline, error)

Do executes the "genomics.pipelines.get" call. Exactly one of *Pipeline or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Pipeline.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesGetCall) Fields Uses

func (c *PipelinesGetCall) Fields(s ...googleapi.Field) *PipelinesGetCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesGetCall) Header Uses

func (c *PipelinesGetCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*PipelinesGetCall) IfNoneMatch Uses

func (c *PipelinesGetCall) IfNoneMatch(entityTag string) *PipelinesGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type PipelinesGetControllerConfigCall Uses

type PipelinesGetControllerConfigCall struct {
    // contains filtered or unexported fields
}

func (*PipelinesGetControllerConfigCall) Context Uses

func (c *PipelinesGetControllerConfigCall) Context(ctx context.Context) *PipelinesGetControllerConfigCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesGetControllerConfigCall) Do Uses

func (c *PipelinesGetControllerConfigCall) Do(opts ...googleapi.CallOption) (*ControllerConfig, error)

Do executes the "genomics.pipelines.getControllerConfig" call. Exactly one of *ControllerConfig or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ControllerConfig.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesGetControllerConfigCall) Fields Uses

func (c *PipelinesGetControllerConfigCall) Fields(s ...googleapi.Field) *PipelinesGetControllerConfigCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesGetControllerConfigCall) Header Uses

func (c *PipelinesGetControllerConfigCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*PipelinesGetControllerConfigCall) IfNoneMatch Uses

func (c *PipelinesGetControllerConfigCall) IfNoneMatch(entityTag string) *PipelinesGetControllerConfigCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*PipelinesGetControllerConfigCall) OperationId Uses

func (c *PipelinesGetControllerConfigCall) OperationId(operationId string) *PipelinesGetControllerConfigCall

OperationId sets the optional parameter "operationId": The operation to retrieve controller configuration for.

func (*PipelinesGetControllerConfigCall) ValidationToken Uses

func (c *PipelinesGetControllerConfigCall) ValidationToken(validationToken uint64) *PipelinesGetControllerConfigCall

ValidationToken sets the optional parameter "validationToken":

type PipelinesListCall Uses

type PipelinesListCall struct {
    // contains filtered or unexported fields
}

func (*PipelinesListCall) Context Uses

func (c *PipelinesListCall) Context(ctx context.Context) *PipelinesListCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesListCall) Do Uses

func (c *PipelinesListCall) Do(opts ...googleapi.CallOption) (*ListPipelinesResponse, error)

Do executes the "genomics.pipelines.list" call. Exactly one of *ListPipelinesResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ListPipelinesResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesListCall) Fields Uses

func (c *PipelinesListCall) Fields(s ...googleapi.Field) *PipelinesListCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesListCall) Header Uses

func (c *PipelinesListCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

func (*PipelinesListCall) IfNoneMatch Uses

func (c *PipelinesListCall) IfNoneMatch(entityTag string) *PipelinesListCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*PipelinesListCall) NamePrefix Uses

func (c *PipelinesListCall) NamePrefix(namePrefix string) *PipelinesListCall

NamePrefix sets the optional parameter "namePrefix": Pipelines with names that match this prefix should be returned. If unspecified, all pipelines in the project, up to `pageSize`, will be returned.

func (*PipelinesListCall) PageSize Uses

func (c *PipelinesListCall) PageSize(pageSize int64) *PipelinesListCall

PageSize sets the optional parameter "pageSize": Number of pipelines to return at once. Defaults to 256, and max is 2048.

func (*PipelinesListCall) PageToken Uses

func (c *PipelinesListCall) PageToken(pageToken string) *PipelinesListCall

PageToken sets the optional parameter "pageToken": Token to use to indicate where to start getting results. If unspecified, returns the first page of results.

func (*PipelinesListCall) Pages Uses

func (c *PipelinesListCall) Pages(ctx context.Context, f func(*ListPipelinesResponse) error) error

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

func (*PipelinesListCall) ProjectId Uses

func (c *PipelinesListCall) ProjectId(projectId string) *PipelinesListCall

ProjectId sets the optional parameter "projectId": Required. The name of the project to search for pipelines. Caller must have READ access to this project.

type PipelinesRunCall Uses

type PipelinesRunCall struct {
    // contains filtered or unexported fields
}

func (*PipelinesRunCall) Context Uses

func (c *PipelinesRunCall) Context(ctx context.Context) *PipelinesRunCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesRunCall) Do Uses

func (c *PipelinesRunCall) Do(opts ...googleapi.CallOption) (*Operation, error)

Do executes the "genomics.pipelines.run" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesRunCall) Fields Uses

func (c *PipelinesRunCall) Fields(s ...googleapi.Field) *PipelinesRunCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesRunCall) Header Uses

func (c *PipelinesRunCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type PipelinesService Uses

type PipelinesService struct {
    // contains filtered or unexported fields
}

func NewPipelinesService Uses

func NewPipelinesService(s *Service) *PipelinesService

func (*PipelinesService) Create Uses

func (r *PipelinesService) Create(pipeline *Pipeline) *PipelinesCreateCall

Create: Creates a pipeline that can be run later. Create takes a Pipeline that has all fields other than `pipelineId` populated, and then returns the same pipeline with `pipelineId` populated. This id can be used to run the pipeline.

Caller must have WRITE permission to the project.

func (*PipelinesService) Delete Uses

func (r *PipelinesService) Delete(pipelineId string) *PipelinesDeleteCall

Delete: Deletes a pipeline based on ID.

Caller must have WRITE permission to the project.

func (*PipelinesService) Get Uses

func (r *PipelinesService) Get(pipelineId string) *PipelinesGetCall

Get: Retrieves a pipeline based on ID.

Caller must have READ permission to the project.

func (*PipelinesService) GetControllerConfig Uses

func (r *PipelinesService) GetControllerConfig() *PipelinesGetControllerConfigCall

GetControllerConfig: Gets controller configuration information. Should only be called by VMs created by the Pipelines Service and not by end users.

func (*PipelinesService) List Uses

func (r *PipelinesService) List() *PipelinesListCall

List: Lists pipelines.

Caller must have READ permission to the project.

func (*PipelinesService) Run Uses

func (r *PipelinesService) Run(runpipelinerequest *RunPipelineRequest) *PipelinesRunCall

Run: Runs a pipeline. If `pipelineId` is specified in the request, then run a saved pipeline. If `ephemeralPipeline` is specified, then run that pipeline once without saving a copy.

The caller must have READ permission to the project where the pipeline is stored and WRITE permission to the project where the pipeline will be run, as VMs will be created and storage will be used.

If a pipeline operation is still running after 6 days, it will be canceled.

func (*PipelinesService) SetOperationStatus Uses

func (r *PipelinesService) SetOperationStatus(setoperationstatusrequest *SetOperationStatusRequest) *PipelinesSetOperationStatusCall

SetOperationStatus: Sets status of a given operation. Any new timestamps (as determined by description) are appended to TimestampEvents. Should only be called by VMs created by the Pipelines Service and not by end users.

type PipelinesSetOperationStatusCall Uses

type PipelinesSetOperationStatusCall struct {
    // contains filtered or unexported fields
}

func (*PipelinesSetOperationStatusCall) Context Uses

func (c *PipelinesSetOperationStatusCall) Context(ctx context.Context) *PipelinesSetOperationStatusCall

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*PipelinesSetOperationStatusCall) Do Uses

func (c *PipelinesSetOperationStatusCall) Do(opts ...googleapi.CallOption) (*Empty, error)

Do executes the "genomics.pipelines.setOperationStatus" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*PipelinesSetOperationStatusCall) Fields Uses

func (c *PipelinesSetOperationStatusCall) Fields(s ...googleapi.Field) *PipelinesSetOperationStatusCall

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*PipelinesSetOperationStatusCall) Header Uses

func (c *PipelinesSetOperationStatusCall) Header() http.Header

Header returns an http.Header that can be modified by the caller to add HTTP headers to the request.

type PullStartedEvent Uses

type PullStartedEvent struct {
    // ImageUri: The URI of the image that was pulled.
    ImageUri string `json:"imageUri,omitempty"`

    // ForceSendFields is a list of field names (e.g. "ImageUri") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "ImageUri") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

PullStartedEvent: An event generated when the worker starts pulling an image.

func (*PullStartedEvent) MarshalJSON Uses

func (s *PullStartedEvent) MarshalJSON() ([]byte, error)

type PullStoppedEvent Uses

type PullStoppedEvent struct {
    // ImageUri: The URI of the image that was pulled.
    ImageUri string `json:"imageUri,omitempty"`

    // ForceSendFields is a list of field names (e.g. "ImageUri") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "ImageUri") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

PullStoppedEvent: An event generated when the worker stops pulling an image.

func (*PullStoppedEvent) MarshalJSON Uses

func (s *PullStoppedEvent) MarshalJSON() ([]byte, error)

type RepeatedString Uses

type RepeatedString struct {
    Values []string `json:"values,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Values") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Values") to include in API
    // requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

func (*RepeatedString) MarshalJSON Uses

func (s *RepeatedString) MarshalJSON() ([]byte, error)

type RunPipelineArgs Uses

type RunPipelineArgs struct {
    // ClientId: This field is deprecated. Use `labels` instead.
    // Client-specified pipeline
    // operation identifier.
    ClientId string `json:"clientId,omitempty"`

    // Inputs: Pipeline input arguments; keys are defined in the pipeline
    // documentation.
    // All input parameters that do not have default values  must be
    // specified.
    // If parameters with defaults are specified here, the defaults will
    // be
    // overridden.
    Inputs map[string]string `json:"inputs,omitempty"`

    // KeepVmAliveOnFailureDuration: How long to keep the VM up after a
    // failure (for example docker command
    // failed, copying input or output files failed, etc). While the VM is
    // up, one
    // can ssh into the VM to debug. Default is 0; maximum allowed value is
    // 1 day.
    KeepVmAliveOnFailureDuration string `json:"keepVmAliveOnFailureDuration,omitempty"`

    // Labels: Labels to apply to this pipeline run. Labels will also be
    // applied to
    // compute resources (VM, disks) created by this pipeline run. When
    // listing
    // operations, operations can filtered by labels.
    // Label keys may not be empty; label values may be empty. Non-empty
    // labels
    // must be 1-63 characters long, and comply with
    // [RFC1035]
    // (https://www.ietf.org/rfc/rfc1035.txt).
    // Specifically, the name must be 1-63 characters long and match the
    // regular
    // expression `[a-z]([-a-z0-9]*[a-z0-9])?` which means the
    // first
    // character must be a lowercase letter, and all following characters
    // must be
    // a dash, lowercase letter, or digit, except the last character, which
    // cannot
    // be a dash.
    Labels map[string]string `json:"labels,omitempty"`

    // Logging: Required. Logging options. Used by the service to
    // communicate results
    // to the user.
    Logging *LoggingOptions `json:"logging,omitempty"`

    // Outputs: Pipeline output arguments; keys are defined in the
    // pipeline
    // documentation.  All output parameters of without default values
    // must be specified.  If parameters with defaults are specified
    // here, the defaults will be overridden.
    Outputs map[string]string `json:"outputs,omitempty"`

    // ProjectId: Required. The project in which to run the pipeline. The
    // caller must have
    // WRITER access to all Google Cloud services and resources (e.g.
    // Google
    // Compute Engine) will be used.
    ProjectId string `json:"projectId,omitempty"`

    // Resources: Specifies resource requirements/overrides for the pipeline
    // run.
    Resources *PipelineResources `json:"resources,omitempty"`

    // ServiceAccount: The Google Cloud Service Account that will be used to
    // access data and
    // services. By default, the compute service account associated
    // with
    // `projectId` is used.
    ServiceAccount *ServiceAccount `json:"serviceAccount,omitempty"`

    // ForceSendFields is a list of field names (e.g. "ClientId") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "ClientId") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

RunPipelineArgs: The pipeline run arguments.

func (*RunPipelineArgs) MarshalJSON Uses

func (s *RunPipelineArgs) MarshalJSON() ([]byte, error)

type RunPipelineRequest Uses

type RunPipelineRequest struct {
    // EphemeralPipeline: A new pipeline object to run once and then delete.
    EphemeralPipeline *Pipeline `json:"ephemeralPipeline,omitempty"`

    // PipelineArgs: The arguments to use when running this pipeline.
    PipelineArgs *RunPipelineArgs `json:"pipelineArgs,omitempty"`

    // PipelineId: The already created pipeline to run.
    PipelineId string `json:"pipelineId,omitempty"`

    // ForceSendFields is a list of field names (e.g. "EphemeralPipeline")
    // to unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "EphemeralPipeline") to
    // include in API requests with the JSON null value. By default, fields
    // with empty values are omitted from API requests. However, any field
    // with an empty value appearing in NullFields will be sent to the
    // server as null. It is an error if a field in this list has a
    // non-empty value. This may be used to include null fields in Patch
    // requests.
    NullFields []string `json:"-"`
}

RunPipelineRequest: The request to run a pipeline. If `pipelineId` is specified, it refers to a saved pipeline created with CreatePipeline and set as the `pipelineId` of the returned Pipeline object. If `ephemeralPipeline` is specified, that pipeline is run once with the given args and not saved. It is an error to specify both `pipelineId` and `ephemeralPipeline`. `pipelineArgs` must be specified.

func (*RunPipelineRequest) MarshalJSON Uses

func (s *RunPipelineRequest) MarshalJSON() ([]byte, error)

type RunPipelineResponse Uses

type RunPipelineResponse struct {
}

RunPipelineResponse: The response to the RunPipeline method, returned in the operation's result field on success.

type RuntimeMetadata Uses

type RuntimeMetadata struct {
    // ComputeEngine: Execution information specific to Google Compute
    // Engine.
    ComputeEngine *ComputeEngine `json:"computeEngine,omitempty"`

    // ForceSendFields is a list of field names (e.g. "ComputeEngine") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "ComputeEngine") to include
    // in API requests with the JSON null value. By default, fields with
    // empty values are omitted from API requests. However, any field with
    // an empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

RuntimeMetadata: Runtime metadata that will be populated in the runtimeMetadata field of the Operation associated with a RunPipeline execution.

func (*RuntimeMetadata) MarshalJSON Uses

func (s *RuntimeMetadata) MarshalJSON() ([]byte, error)

type Service Uses

type Service struct {
    BasePath  string // API endpoint base URL
    UserAgent string // optional additional User-Agent fragment

    Operations *OperationsService

    Pipelines *PipelinesService
    // contains filtered or unexported fields
}

func New Uses

func New(client *http.Client) (*Service, error)

New creates a new Service. It uses the provided http.Client for requests.

Deprecated: please use NewService instead. To provide a custom HTTP client, use option.WithHTTPClient. If you are using google.golang.org/api/googleapis/transport.APIKey, use option.WithAPIKey with NewService instead.

func NewService Uses

func NewService(ctx context.Context, opts ...option.ClientOption) (*Service, error)

NewService creates a new Service.

type ServiceAccount Uses

type ServiceAccount struct {
    // Email: Email address of the service account. Defaults to
    // `default`,
    // which uses the compute service account associated with the project.
    Email string `json:"email,omitempty"`

    // Scopes: List of scopes to be enabled for this service account on the
    // VM.
    // The following scopes are automatically included:
    //
    // * https://www.googleapis.com/auth/compute
    // * https://www.googleapis.com/auth/devstorage.full_control
    // * https://www.googleapis.com/auth/genomics
    // * https://www.googleapis.com/auth/logging.write
    // * https://www.googleapis.com/auth/monitoring.write
    Scopes []string `json:"scopes,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Email") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Email") to include in API
    // requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

ServiceAccount: A Google Cloud Service Account.

func (*ServiceAccount) MarshalJSON Uses

func (s *ServiceAccount) MarshalJSON() ([]byte, error)

type SetOperationStatusRequest Uses

type SetOperationStatusRequest struct {
    // Possible values:
    //   "OK" - Not an error; returned on success
    //
    // HTTP Mapping: 200 OK
    //   "CANCELLED" - The operation was cancelled, typically by the
    // caller.
    //
    // HTTP Mapping: 499 Client Closed Request
    //   "UNKNOWN" - Unknown error.  For example, this error may be returned
    // when
    // a `Status` value received from another address space belongs to
    // an error space that is not known in this address space.  Also
    // errors raised by APIs that do not return enough error information
    // may be converted to this error.
    //
    // HTTP Mapping: 500 Internal Server Error
    //   "INVALID_ARGUMENT" - The client specified an invalid argument.
    // Note that this differs
    // from `FAILED_PRECONDITION`.  `INVALID_ARGUMENT` indicates
    // arguments
    // that are problematic regardless of the state of the system
    // (e.g., a malformed file name).
    //
    // HTTP Mapping: 400 Bad Request
    //   "DEADLINE_EXCEEDED" - The deadline expired before the operation
    // could complete. For operations
    // that change the state of the system, this error may be returned
    // even if the operation has completed successfully.  For example,
    // a
    // successful response from a server could have been delayed long
    // enough for the deadline to expire.
    //
    // HTTP Mapping: 504 Gateway Timeout
    //   "NOT_FOUND" - Some requested entity (e.g., file or directory) was
    // not found.
    //
    // Note to server developers: if a request is denied for an entire
    // class
    // of users, such as gradual feature rollout or undocumented
    // whitelist,
    // `NOT_FOUND` may be used. If a request is denied for some users
    // within
    // a class of users, such as user-based access control,
    // `PERMISSION_DENIED`
    // must be used.
    //
    // HTTP Mapping: 404 Not Found
    //   "ALREADY_EXISTS" - The entity that a client attempted to create
    // (e.g., file or directory)
    // already exists.
    //
    // HTTP Mapping: 409 Conflict
    //   "PERMISSION_DENIED" - The caller does not have permission to
    // execute the specified
    // operation. `PERMISSION_DENIED` must not be used for rejections
    // caused by exhausting some resource (use `RESOURCE_EXHAUSTED`
    // instead for those errors). `PERMISSION_DENIED` must not be
    // used if the caller can not be identified (use
    // `UNAUTHENTICATED`
    // instead for those errors). This error code does not imply the
    // request is valid or the requested entity exists or satisfies
    // other pre-conditions.
    //
    // HTTP Mapping: 403 Forbidden
    //   "UNAUTHENTICATED" - The request does not have valid authentication
    // credentials for the
    // operation.
    //
    // HTTP Mapping: 401 Unauthorized
    //   "RESOURCE_EXHAUSTED" - Some resource has been exhausted, perhaps a
    // per-user quota, or
    // perhaps the entire file system is out of space.
    //
    // HTTP Mapping: 429 Too Many Requests
    //   "FAILED_PRECONDITION" - The operation was rejected because the
    // system is not in a state
    // required for the operation's execution.  For example, the
    // directory
    // to be deleted is non-empty, an rmdir operation is applied to
    // a non-directory, etc.
    //
    // Service implementors can use the following guidelines to
    // decide
    // between `FAILED_PRECONDITION`, `ABORTED`, and `UNAVAILABLE`:
    //  (a) Use `UNAVAILABLE` if the client can retry just the failing
    // call.
    //  (b) Use `ABORTED` if the client should retry at a higher level
    //      (e.g., when a client-specified test-and-set fails, indicating
    // the
    //      client should restart a read-modify-write sequence).
    //  (c) Use `FAILED_PRECONDITION` if the client should not retry until
    //      the system state has been explicitly fixed.  E.g., if an
    // "rmdir"
    //      fails because the directory is non-empty, `FAILED_PRECONDITION`
    //      should be returned since the client should not retry unless
    //      the files are deleted from the directory.
    //
    // HTTP Mapping: 400 Bad Request
    //   "ABORTED" - The operation was aborted, typically due to a
    // concurrency issue such as
    // a sequencer check failure or transaction abort.
    //
    // See the guidelines above for deciding between
    // `FAILED_PRECONDITION`,
    // `ABORTED`, and `UNAVAILABLE`.
    //
    // HTTP Mapping: 409 Conflict
    //   "OUT_OF_RANGE" - The operation was attempted past the valid range.
    // E.g., seeking or
    // reading past end-of-file.
    //
    // Unlike `INVALID_ARGUMENT`, this error indicates a problem that may
    // be fixed if the system state changes. For example, a 32-bit
    // file
    // system will generate `INVALID_ARGUMENT` if asked to read at an
    // offset that is not in the range [0,2^32-1], but it will
    // generate
    // `OUT_OF_RANGE` if asked to read from an offset past the current
    // file size.
    //
    // There is a fair bit of overlap between `FAILED_PRECONDITION`
    // and
    // `OUT_OF_RANGE`.  We recommend using `OUT_OF_RANGE` (the more
    // specific
    // error) when it applies so that callers who are iterating through
    // a space can easily look for an `OUT_OF_RANGE` error to detect
    // when
    // they are done.
    //
    // HTTP Mapping: 400 Bad Request
    //   "UNIMPLEMENTED" - The operation is not implemented or is not
    // supported/enabled in this
    // service.
    //
    // HTTP Mapping: 501 Not Implemented
    //   "INTERNAL" - Internal errors.  This means that some invariants
    // expected by the
    // underlying system have been broken.  This error code is reserved
    // for serious errors.
    //
    // HTTP Mapping: 500 Internal Server Error
    //   "UNAVAILABLE" - The service is currently unavailable.  This is most
    // likely a
    // transient condition, which can be corrected by retrying with
    // a backoff. Note that it is not always safe to retry
    // non-idempotent operations.
    //
    // See the guidelines above for deciding between
    // `FAILED_PRECONDITION`,
    // `ABORTED`, and `UNAVAILABLE`.
    //
    // HTTP Mapping: 503 Service Unavailable
    //   "DATA_LOSS" - Unrecoverable data loss or corruption.
    //
    // HTTP Mapping: 500 Internal Server Error
    ErrorCode string `json:"errorCode,omitempty"`

    ErrorMessage string `json:"errorMessage,omitempty"`

    OperationId string `json:"operationId,omitempty"`

    TimestampEvents []*TimestampEvent `json:"timestampEvents,omitempty"`

    ValidationToken uint64 `json:"validationToken,omitempty,string"`

    // ForceSendFields is a list of field names (e.g. "ErrorCode") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "ErrorCode") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

SetOperationStatusRequest: Request to set operation status. Should only be used by VMs created by the Pipelines Service and not by end users.

func (*SetOperationStatusRequest) MarshalJSON Uses

func (s *SetOperationStatusRequest) MarshalJSON() ([]byte, error)

type Status Uses

type Status struct {
    // Code: The status code, which should be an enum value of
    // google.rpc.Code.
    Code int64 `json:"code,omitempty"`

    // Details: A list of messages that carry the error details.  There is a
    // common set of
    // message types for APIs to use.
    Details []googleapi.RawMessage `json:"details,omitempty"`

    // Message: A developer-facing error message, which should be in
    // English. Any
    // user-facing error message should be localized and sent in
    // the
    // google.rpc.Status.details field, or localized by the client.
    Message string `json:"message,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Code") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Code") to include in API
    // requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

Status: The `Status` type defines a logical error model that is suitable for different programming environments, including REST APIs and RPC APIs. It is used by [gRPC](https://github.com/grpc). Each `Status` message contains three pieces of data: error code, error message, and error details.

You can find out more about this error model and how to work with it in the [API Design Guide](https://cloud.google.com/apis/design/errors).

func (*Status) MarshalJSON Uses

func (s *Status) MarshalJSON() ([]byte, error)

type TimestampEvent Uses

type TimestampEvent struct {
    // Description: String indicating the type of event
    Description string `json:"description,omitempty"`

    // Timestamp: The time this event occured.
    Timestamp string `json:"timestamp,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Description") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Description") to include
    // in API requests with the JSON null value. By default, fields with
    // empty values are omitted from API requests. However, any field with
    // an empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

TimestampEvent: Stores the list of events and times they occured for major events in job execution.

func (*TimestampEvent) MarshalJSON Uses

func (s *TimestampEvent) MarshalJSON() ([]byte, error)

type UnexpectedExitStatusEvent Uses

type UnexpectedExitStatusEvent struct {
    // ActionId: The numeric ID of the action that started the container.
    ActionId int64 `json:"actionId,omitempty"`

    // ExitStatus: The exit status of the container.
    ExitStatus int64 `json:"exitStatus,omitempty"`

    // ForceSendFields is a list of field names (e.g. "ActionId") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "ActionId") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

UnexpectedExitStatusEvent: An event generated when the execution of a container results in a non-zero exit status that was not otherwise ignored. Execution will continue, but only actions that are flagged as `ALWAYS_RUN` will be executed. Other actions will be skipped.

func (*UnexpectedExitStatusEvent) MarshalJSON Uses

func (s *UnexpectedExitStatusEvent) MarshalJSON() ([]byte, error)

type WorkerAssignedEvent Uses

type WorkerAssignedEvent struct {
    // Instance: The worker's instance name.
    Instance string `json:"instance,omitempty"`

    // MachineType: The machine type that was assigned for the worker.
    MachineType string `json:"machineType,omitempty"`

    // Zone: The zone the worker is running in.
    Zone string `json:"zone,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Instance") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Instance") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

WorkerAssignedEvent: An event generated after a worker VM has been assigned to run the pipeline.

func (*WorkerAssignedEvent) MarshalJSON Uses

func (s *WorkerAssignedEvent) MarshalJSON() ([]byte, error)

type WorkerReleasedEvent Uses

type WorkerReleasedEvent struct {
    // Instance: The worker's instance name.
    Instance string `json:"instance,omitempty"`

    // Zone: The zone the worker was running in.
    Zone string `json:"zone,omitempty"`

    // ForceSendFields is a list of field names (e.g. "Instance") to
    // unconditionally include in API requests. By default, fields with
    // empty values are omitted from API requests. However, any non-pointer,
    // non-interface field appearing in ForceSendFields will be sent to the
    // server regardless of whether the field is empty or not. This may be
    // used to include empty fields in Patch requests.
    ForceSendFields []string `json:"-"`

    // NullFields is a list of field names (e.g. "Instance") to include in
    // API requests with the JSON null value. By default, fields with empty
    // values are omitted from API requests. However, any field with an
    // empty value appearing in NullFields will be sent to the server as
    // null. It is an error if a field in this list has a non-empty value.
    // This may be used to include null fields in Patch requests.
    NullFields []string `json:"-"`
}

WorkerReleasedEvent: An event generated when the worker VM that was assigned to the pipeline has been released (deleted).

func (*WorkerReleasedEvent) MarshalJSON Uses

func (s *WorkerReleasedEvent) MarshalJSON() ([]byte, error)

Package genomics imports 14 packages (graph). Updated 2019-09-15. Refresh now. Tools for package owners.