genproto: google.golang.org/genproto/googleapis/genomics/v1 Index | Files

package genomics

import "google.golang.org/genproto/googleapis/genomics/v1"

Index

Package Files

annotations.pb.go cigar.pb.go datasets.pb.go operations.pb.go position.pb.go range.pb.go readalignment.pb.go readgroup.pb.go readgroupset.pb.go reads.pb.go references.pb.go variants.pb.go

Variables

var (
    AnnotationType_name = map[int32]string{
        0:  "ANNOTATION_TYPE_UNSPECIFIED",
        1:  "GENERIC",
        2:  "VARIANT",
        3:  "GENE",
        4:  "TRANSCRIPT",
    }
    AnnotationType_value = map[string]int32{
        "ANNOTATION_TYPE_UNSPECIFIED": 0,
        "GENERIC":                     1,
        "VARIANT":                     2,
        "GENE":                        3,
        "TRANSCRIPT":                  4,
    }
)

Enum value maps for AnnotationType.

var (
    VariantAnnotation_Type_name = map[int32]string{
        0:  "TYPE_UNSPECIFIED",
        1:  "TYPE_OTHER",
        2:  "INSERTION",
        3:  "DELETION",
        4:  "SUBSTITUTION",
        5:  "SNP",
        6:  "STRUCTURAL",
        7:  "CNV",
    }
    VariantAnnotation_Type_value = map[string]int32{
        "TYPE_UNSPECIFIED": 0,
        "TYPE_OTHER":       1,
        "INSERTION":        2,
        "DELETION":         3,
        "SUBSTITUTION":     4,
        "SNP":              5,
        "STRUCTURAL":       6,
        "CNV":              7,
    }
)

Enum value maps for VariantAnnotation_Type.

var (
    VariantAnnotation_Effect_name = map[int32]string{
        0:  "EFFECT_UNSPECIFIED",
        1:  "EFFECT_OTHER",
        2:  "FRAMESHIFT",
        3:  "FRAME_PRESERVING_INDEL",
        4:  "SYNONYMOUS_SNP",
        5:  "NONSYNONYMOUS_SNP",
        6:  "STOP_GAIN",
        7:  "STOP_LOSS",
        8:  "SPLICE_SITE_DISRUPTION",
    }
    VariantAnnotation_Effect_value = map[string]int32{
        "EFFECT_UNSPECIFIED":     0,
        "EFFECT_OTHER":           1,
        "FRAMESHIFT":             2,
        "FRAME_PRESERVING_INDEL": 3,
        "SYNONYMOUS_SNP":         4,
        "NONSYNONYMOUS_SNP":      5,
        "STOP_GAIN":              6,
        "STOP_LOSS":              7,
        "SPLICE_SITE_DISRUPTION": 8,
    }
)

Enum value maps for VariantAnnotation_Effect.

var (
    VariantAnnotation_ClinicalSignificance_name = map[int32]string{
        0:  "CLINICAL_SIGNIFICANCE_UNSPECIFIED",
        1:  "CLINICAL_SIGNIFICANCE_OTHER",
        2:  "UNCERTAIN",
        3:  "BENIGN",
        4:  "LIKELY_BENIGN",
        5:  "LIKELY_PATHOGENIC",
        6:  "PATHOGENIC",
        7:  "DRUG_RESPONSE",
        8:  "HISTOCOMPATIBILITY",
        9:  "CONFERS_SENSITIVITY",
        10: "RISK_FACTOR",
        11: "ASSOCIATION",
        12: "PROTECTIVE",
        13: "MULTIPLE_REPORTED",
    }
    VariantAnnotation_ClinicalSignificance_value = map[string]int32{
        "CLINICAL_SIGNIFICANCE_UNSPECIFIED": 0,
        "CLINICAL_SIGNIFICANCE_OTHER":       1,
        "UNCERTAIN":                         2,
        "BENIGN":                            3,
        "LIKELY_BENIGN":                     4,
        "LIKELY_PATHOGENIC":                 5,
        "PATHOGENIC":                        6,
        "DRUG_RESPONSE":                     7,
        "HISTOCOMPATIBILITY":                8,
        "CONFERS_SENSITIVITY":               9,
        "RISK_FACTOR":                       10,
        "ASSOCIATION":                       11,
        "PROTECTIVE":                        12,
        "MULTIPLE_REPORTED":                 13,
    }
)

Enum value maps for VariantAnnotation_ClinicalSignificance.

var (
    CigarUnit_Operation_name = map[int32]string{
        0:  "OPERATION_UNSPECIFIED",
        1:  "ALIGNMENT_MATCH",
        2:  "INSERT",
        3:  "DELETE",
        4:  "SKIP",
        5:  "CLIP_SOFT",
        6:  "CLIP_HARD",
        7:  "PAD",
        8:  "SEQUENCE_MATCH",
        9:  "SEQUENCE_MISMATCH",
    }
    CigarUnit_Operation_value = map[string]int32{
        "OPERATION_UNSPECIFIED": 0,
        "ALIGNMENT_MATCH":       1,
        "INSERT":                2,
        "DELETE":                3,
        "SKIP":                  4,
        "CLIP_SOFT":             5,
        "CLIP_HARD":             6,
        "PAD":                   7,
        "SEQUENCE_MATCH":        8,
        "SEQUENCE_MISMATCH":     9,
    }
)

Enum value maps for CigarUnit_Operation.

var (
    ImportReadGroupSetsRequest_PartitionStrategy_name = map[int32]string{
        0:  "PARTITION_STRATEGY_UNSPECIFIED",
        1:  "PER_FILE_PER_SAMPLE",
        2:  "MERGE_ALL",
    }
    ImportReadGroupSetsRequest_PartitionStrategy_value = map[string]int32{
        "PARTITION_STRATEGY_UNSPECIFIED": 0,
        "PER_FILE_PER_SAMPLE":            1,
        "MERGE_ALL":                      2,
    }
)

Enum value maps for ImportReadGroupSetsRequest_PartitionStrategy.

var (
    InfoMergeOperation_name = map[int32]string{
        0:  "INFO_MERGE_OPERATION_UNSPECIFIED",
        1:  "IGNORE_NEW",
        2:  "MOVE_TO_CALLS",
    }
    InfoMergeOperation_value = map[string]int32{
        "INFO_MERGE_OPERATION_UNSPECIFIED": 0,
        "IGNORE_NEW":                       1,
        "MOVE_TO_CALLS":                    2,
    }
)

Enum value maps for InfoMergeOperation.

var (
    VariantSetMetadata_Type_name = map[int32]string{
        0:  "TYPE_UNSPECIFIED",
        1:  "INTEGER",
        2:  "FLOAT",
        3:  "FLAG",
        4:  "CHARACTER",
        5:  "STRING",
    }
    VariantSetMetadata_Type_value = map[string]int32{
        "TYPE_UNSPECIFIED": 0,
        "INTEGER":          1,
        "FLOAT":            2,
        "FLAG":             3,
        "CHARACTER":        4,
        "STRING":           5,
    }
)

Enum value maps for VariantSetMetadata_Type.

var (
    ImportVariantsRequest_Format_name = map[int32]string{
        0:  "FORMAT_UNSPECIFIED",
        1:  "FORMAT_VCF",
        2:  "FORMAT_COMPLETE_GENOMICS",
    }
    ImportVariantsRequest_Format_value = map[string]int32{
        "FORMAT_UNSPECIFIED":       0,
        "FORMAT_VCF":               1,
        "FORMAT_COMPLETE_GENOMICS": 2,
    }
)

Enum value maps for ImportVariantsRequest_Format.

var (
    ExportVariantSetRequest_Format_name = map[int32]string{
        0:  "FORMAT_UNSPECIFIED",
        1:  "FORMAT_BIGQUERY",
    }
    ExportVariantSetRequest_Format_value = map[string]int32{
        "FORMAT_UNSPECIFIED": 0,
        "FORMAT_BIGQUERY":    1,
    }
)

Enum value maps for ExportVariantSetRequest_Format.

var File_google_genomics_v1_annotations_proto protoreflect.FileDescriptor
var File_google_genomics_v1_cigar_proto protoreflect.FileDescriptor
var File_google_genomics_v1_datasets_proto protoreflect.FileDescriptor
var File_google_genomics_v1_operations_proto protoreflect.FileDescriptor
var File_google_genomics_v1_position_proto protoreflect.FileDescriptor
var File_google_genomics_v1_range_proto protoreflect.FileDescriptor
var File_google_genomics_v1_readalignment_proto protoreflect.FileDescriptor
var File_google_genomics_v1_readgroup_proto protoreflect.FileDescriptor
var File_google_genomics_v1_readgroupset_proto protoreflect.FileDescriptor
var File_google_genomics_v1_reads_proto protoreflect.FileDescriptor
var File_google_genomics_v1_references_proto protoreflect.FileDescriptor
var File_google_genomics_v1_variants_proto protoreflect.FileDescriptor

func RegisterAnnotationServiceV1Server Uses

func RegisterAnnotationServiceV1Server(s *grpc.Server, srv AnnotationServiceV1Server)

func RegisterDatasetServiceV1Server Uses

func RegisterDatasetServiceV1Server(s *grpc.Server, srv DatasetServiceV1Server)

func RegisterReadServiceV1Server Uses

func RegisterReadServiceV1Server(s *grpc.Server, srv ReadServiceV1Server)

func RegisterReferenceServiceV1Server Uses

func RegisterReferenceServiceV1Server(s *grpc.Server, srv ReferenceServiceV1Server)

func RegisterStreamingReadServiceServer Uses

func RegisterStreamingReadServiceServer(s *grpc.Server, srv StreamingReadServiceServer)

func RegisterStreamingVariantServiceServer Uses

func RegisterStreamingVariantServiceServer(s *grpc.Server, srv StreamingVariantServiceServer)

func RegisterVariantServiceV1Server Uses

func RegisterVariantServiceV1Server(s *grpc.Server, srv VariantServiceV1Server)

type Annotation Uses

type Annotation struct {

    // The server-generated annotation ID, unique across all annotations.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The annotation set to which this annotation belongs.
    AnnotationSetId string `protobuf:"bytes,2,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
    // The display name of this annotation.
    Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
    // The ID of the Google Genomics reference associated with this range.
    ReferenceId string `protobuf:"bytes,4,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
    // The display name corresponding to the reference specified by
    // `referenceId`, for example `chr1`, `1`, or `chrX`.
    ReferenceName string `protobuf:"bytes,5,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The start position of the range on the reference, 0-based inclusive.
    Start int64 `protobuf:"varint,6,opt,name=start,proto3" json:"start,omitempty"`
    // The end position of the range on the reference, 0-based exclusive.
    End int64 `protobuf:"varint,7,opt,name=end,proto3" json:"end,omitempty"`
    // Whether this range refers to the reverse strand, as opposed to the forward
    // strand. Note that regardless of this field, the start/end position of the
    // range always refer to the forward strand.
    ReverseStrand bool `protobuf:"varint,8,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
    // The data type for this annotation. Must match the containing annotation
    // set's type.
    Type AnnotationType `protobuf:"varint,9,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
    // Types that are assignable to Value:
    //	*Annotation_Variant
    //	*Annotation_Transcript
    Value isAnnotation_Value `protobuf_oneof:"value"`
    // A map of additional read alignment information. This must be of the form
    // map<string, string[]> (string key mapping to a list of string values).
    Info map[string]*_struct.ListValue `protobuf:"bytes,12,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

An annotation describes a region of reference genome. The value of an annotation may be one of several canonical types, supplemented by arbitrary info tags. An annotation is not inherently associated with a specific sample or individual (though a client could choose to use annotations in this way). Example canonical annotation types are `GENE` and `VARIANT`.

func (*Annotation) Descriptor Uses

func (*Annotation) Descriptor() ([]byte, []int)

Deprecated: Use Annotation.ProtoReflect.Descriptor instead.

func (*Annotation) GetAnnotationSetId Uses

func (x *Annotation) GetAnnotationSetId() string

func (*Annotation) GetEnd Uses

func (x *Annotation) GetEnd() int64

func (*Annotation) GetId Uses

func (x *Annotation) GetId() string

func (*Annotation) GetInfo Uses

func (x *Annotation) GetInfo() map[string]*_struct.ListValue

func (*Annotation) GetName Uses

func (x *Annotation) GetName() string

func (*Annotation) GetReferenceId Uses

func (x *Annotation) GetReferenceId() string

func (*Annotation) GetReferenceName Uses

func (x *Annotation) GetReferenceName() string

func (*Annotation) GetReverseStrand Uses

func (x *Annotation) GetReverseStrand() bool

func (*Annotation) GetStart Uses

func (x *Annotation) GetStart() int64

func (*Annotation) GetTranscript Uses

func (x *Annotation) GetTranscript() *Transcript

func (*Annotation) GetType Uses

func (x *Annotation) GetType() AnnotationType

func (*Annotation) GetValue Uses

func (m *Annotation) GetValue() isAnnotation_Value

func (*Annotation) GetVariant Uses

func (x *Annotation) GetVariant() *VariantAnnotation

func (*Annotation) ProtoMessage Uses

func (*Annotation) ProtoMessage()

func (*Annotation) ProtoReflect Uses

func (x *Annotation) ProtoReflect() protoreflect.Message

func (*Annotation) Reset Uses

func (x *Annotation) Reset()

func (*Annotation) String Uses

func (x *Annotation) String() string

type AnnotationServiceV1Client Uses

type AnnotationServiceV1Client interface {
    // Creates a new annotation set. Caller must have WRITE permission for the
    // associated dataset.
    //
    // The following fields are required:
    //
    //   * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
    //   * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
    //
    // All other fields may be optionally specified, unless documented as being
    // server-generated (for example, the `id` field).
    CreateAnnotationSet(ctx context.Context, in *CreateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
    // Gets an annotation set. Caller must have READ permission for
    // the associated dataset.
    GetAnnotationSet(ctx context.Context, in *GetAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
    // Updates an annotation set. The update must respect all mutability
    // restrictions and other invariants described on the annotation set resource.
    // Caller must have WRITE permission for the associated dataset.
    UpdateAnnotationSet(ctx context.Context, in *UpdateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
    // Deletes an annotation set. Caller must have WRITE permission
    // for the associated annotation set.
    DeleteAnnotationSet(ctx context.Context, in *DeleteAnnotationSetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
    // Searches for annotation sets that match the given criteria. Annotation sets
    // are returned in an unspecified order. This order is consistent, such that
    // two queries for the same content (regardless of page size) yield annotation
    // sets in the same order across their respective streams of paginated
    // responses. Caller must have READ permission for the queried datasets.
    SearchAnnotationSets(ctx context.Context, in *SearchAnnotationSetsRequest, opts ...grpc.CallOption) (*SearchAnnotationSetsResponse, error)
    // Creates a new annotation. Caller must have WRITE permission
    // for the associated annotation set.
    //
    // The following fields are required:
    //
    // * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
    // * [referenceName][google.genomics.v1.Annotation.reference_name] or
    //   [referenceId][google.genomics.v1.Annotation.reference_id]
    //
    // ### Transcripts
    //
    // For annotations of type TRANSCRIPT, the following fields of
    // [transcript][google.genomics.v1.Annotation.transcript] must be provided:
    //
    // * [exons.start][google.genomics.v1.Transcript.Exon.start]
    // * [exons.end][google.genomics.v1.Transcript.Exon.end]
    //
    // All other fields may be optionally specified, unless documented as being
    // server-generated (for example, the `id` field). The annotated
    // range must be no longer than 100Mbp (mega base pairs). See the
    // [Annotation resource][google.genomics.v1.Annotation]
    // for additional restrictions on each field.
    CreateAnnotation(ctx context.Context, in *CreateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
    // Creates one or more new annotations atomically. All annotations must
    // belong to the same annotation set. Caller must have WRITE
    // permission for this annotation set. For optimal performance, batch
    // positionally adjacent annotations together.
    //
    // If the request has a systemic issue, such as an attempt to write to
    // an inaccessible annotation set, the entire RPC will fail accordingly. For
    // lesser data issues, when possible an error will be isolated to the
    // corresponding batch entry in the response; the remaining well formed
    // annotations will be created normally.
    //
    // For details on the requirements for each individual annotation resource,
    // see
    // [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
    BatchCreateAnnotations(ctx context.Context, in *BatchCreateAnnotationsRequest, opts ...grpc.CallOption) (*BatchCreateAnnotationsResponse, error)
    // Gets an annotation. Caller must have READ permission
    // for the associated annotation set.
    GetAnnotation(ctx context.Context, in *GetAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
    // Updates an annotation. Caller must have
    // WRITE permission for the associated dataset.
    UpdateAnnotation(ctx context.Context, in *UpdateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
    // Deletes an annotation. Caller must have WRITE permission for
    // the associated annotation set.
    DeleteAnnotation(ctx context.Context, in *DeleteAnnotationRequest, opts ...grpc.CallOption) (*empty.Empty, error)
    // Searches for annotations that match the given criteria. Results are
    // ordered by genomic coordinate (by reference sequence, then position).
    // Annotations with equivalent genomic coordinates are returned in an
    // unspecified order. This order is consistent, such that two queries for the
    // same content (regardless of page size) yield annotations in the same order
    // across their respective streams of paginated responses. Caller must have
    // READ permission for the queried annotation sets.
    SearchAnnotations(ctx context.Context, in *SearchAnnotationsRequest, opts ...grpc.CallOption) (*SearchAnnotationsResponse, error)
}

AnnotationServiceV1Client is the client API for AnnotationServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewAnnotationServiceV1Client Uses

func NewAnnotationServiceV1Client(cc grpc.ClientConnInterface) AnnotationServiceV1Client

type AnnotationServiceV1Server Uses

type AnnotationServiceV1Server interface {
    // Creates a new annotation set. Caller must have WRITE permission for the
    // associated dataset.
    //
    // The following fields are required:
    //
    //   * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
    //   * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
    //
    // All other fields may be optionally specified, unless documented as being
    // server-generated (for example, the `id` field).
    CreateAnnotationSet(context.Context, *CreateAnnotationSetRequest) (*AnnotationSet, error)
    // Gets an annotation set. Caller must have READ permission for
    // the associated dataset.
    GetAnnotationSet(context.Context, *GetAnnotationSetRequest) (*AnnotationSet, error)
    // Updates an annotation set. The update must respect all mutability
    // restrictions and other invariants described on the annotation set resource.
    // Caller must have WRITE permission for the associated dataset.
    UpdateAnnotationSet(context.Context, *UpdateAnnotationSetRequest) (*AnnotationSet, error)
    // Deletes an annotation set. Caller must have WRITE permission
    // for the associated annotation set.
    DeleteAnnotationSet(context.Context, *DeleteAnnotationSetRequest) (*empty.Empty, error)
    // Searches for annotation sets that match the given criteria. Annotation sets
    // are returned in an unspecified order. This order is consistent, such that
    // two queries for the same content (regardless of page size) yield annotation
    // sets in the same order across their respective streams of paginated
    // responses. Caller must have READ permission for the queried datasets.
    SearchAnnotationSets(context.Context, *SearchAnnotationSetsRequest) (*SearchAnnotationSetsResponse, error)
    // Creates a new annotation. Caller must have WRITE permission
    // for the associated annotation set.
    //
    // The following fields are required:
    //
    // * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
    // * [referenceName][google.genomics.v1.Annotation.reference_name] or
    //   [referenceId][google.genomics.v1.Annotation.reference_id]
    //
    // ### Transcripts
    //
    // For annotations of type TRANSCRIPT, the following fields of
    // [transcript][google.genomics.v1.Annotation.transcript] must be provided:
    //
    // * [exons.start][google.genomics.v1.Transcript.Exon.start]
    // * [exons.end][google.genomics.v1.Transcript.Exon.end]
    //
    // All other fields may be optionally specified, unless documented as being
    // server-generated (for example, the `id` field). The annotated
    // range must be no longer than 100Mbp (mega base pairs). See the
    // [Annotation resource][google.genomics.v1.Annotation]
    // for additional restrictions on each field.
    CreateAnnotation(context.Context, *CreateAnnotationRequest) (*Annotation, error)
    // Creates one or more new annotations atomically. All annotations must
    // belong to the same annotation set. Caller must have WRITE
    // permission for this annotation set. For optimal performance, batch
    // positionally adjacent annotations together.
    //
    // If the request has a systemic issue, such as an attempt to write to
    // an inaccessible annotation set, the entire RPC will fail accordingly. For
    // lesser data issues, when possible an error will be isolated to the
    // corresponding batch entry in the response; the remaining well formed
    // annotations will be created normally.
    //
    // For details on the requirements for each individual annotation resource,
    // see
    // [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
    BatchCreateAnnotations(context.Context, *BatchCreateAnnotationsRequest) (*BatchCreateAnnotationsResponse, error)
    // Gets an annotation. Caller must have READ permission
    // for the associated annotation set.
    GetAnnotation(context.Context, *GetAnnotationRequest) (*Annotation, error)
    // Updates an annotation. Caller must have
    // WRITE permission for the associated dataset.
    UpdateAnnotation(context.Context, *UpdateAnnotationRequest) (*Annotation, error)
    // Deletes an annotation. Caller must have WRITE permission for
    // the associated annotation set.
    DeleteAnnotation(context.Context, *DeleteAnnotationRequest) (*empty.Empty, error)
    // Searches for annotations that match the given criteria. Results are
    // ordered by genomic coordinate (by reference sequence, then position).
    // Annotations with equivalent genomic coordinates are returned in an
    // unspecified order. This order is consistent, such that two queries for the
    // same content (regardless of page size) yield annotations in the same order
    // across their respective streams of paginated responses. Caller must have
    // READ permission for the queried annotation sets.
    SearchAnnotations(context.Context, *SearchAnnotationsRequest) (*SearchAnnotationsResponse, error)
}

AnnotationServiceV1Server is the server API for AnnotationServiceV1 service.

type AnnotationSet Uses

type AnnotationSet struct {

    // The server-generated annotation set ID, unique across all annotation sets.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The dataset to which this annotation set belongs.
    DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    // The ID of the reference set that defines the coordinate space for this
    // set's annotations.
    ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    // The display name for this annotation set.
    Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
    // The source URI describing the file from which this annotation set was
    // generated, if any.
    SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
    // The type of annotations contained within this set.
    Type AnnotationType `protobuf:"varint,6,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
    // A map of additional read alignment information. This must be of the form
    // map<string, string[]> (string key mapping to a list of string values).
    Info map[string]*_struct.ListValue `protobuf:"bytes,17,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

An annotation set is a logical grouping of annotations that share consistent type information and provenance. Examples of annotation sets include 'all genes from refseq', and 'all variant annotations from ClinVar'.

func (*AnnotationSet) Descriptor Uses

func (*AnnotationSet) Descriptor() ([]byte, []int)

Deprecated: Use AnnotationSet.ProtoReflect.Descriptor instead.

func (*AnnotationSet) GetDatasetId Uses

func (x *AnnotationSet) GetDatasetId() string

func (*AnnotationSet) GetId Uses

func (x *AnnotationSet) GetId() string

func (*AnnotationSet) GetInfo Uses

func (x *AnnotationSet) GetInfo() map[string]*_struct.ListValue

func (*AnnotationSet) GetName Uses

func (x *AnnotationSet) GetName() string

func (*AnnotationSet) GetReferenceSetId Uses

func (x *AnnotationSet) GetReferenceSetId() string

func (*AnnotationSet) GetSourceUri Uses

func (x *AnnotationSet) GetSourceUri() string

func (*AnnotationSet) GetType Uses

func (x *AnnotationSet) GetType() AnnotationType

func (*AnnotationSet) ProtoMessage Uses

func (*AnnotationSet) ProtoMessage()

func (*AnnotationSet) ProtoReflect Uses

func (x *AnnotationSet) ProtoReflect() protoreflect.Message

func (*AnnotationSet) Reset Uses

func (x *AnnotationSet) Reset()

func (*AnnotationSet) String Uses

func (x *AnnotationSet) String() string

type AnnotationType Uses

type AnnotationType int32

When an [Annotation][google.genomics.v1.Annotation] or [AnnotationSet][google.genomics.v1.AnnotationSet] is created, if `type` is not specified it will be set to `GENERIC`.

const (
    AnnotationType_ANNOTATION_TYPE_UNSPECIFIED AnnotationType = 0
    // A `GENERIC` annotation type should be used when no other annotation
    // type will suffice. This represents an untyped annotation of the reference
    // genome.
    AnnotationType_GENERIC AnnotationType = 1
    // A `VARIANT` annotation type.
    AnnotationType_VARIANT AnnotationType = 2
    // A `GENE` annotation type represents the existence of a gene at the
    // associated reference coordinates. The start coordinate is typically the
    // gene's transcription start site and the end is typically the end of the
    // gene's last exon.
    AnnotationType_GENE AnnotationType = 3
    // A `TRANSCRIPT` annotation type represents the assertion that a
    // particular region of the reference genome may be transcribed as RNA.
    AnnotationType_TRANSCRIPT AnnotationType = 4
)

func (AnnotationType) Descriptor Uses

func (AnnotationType) Descriptor() protoreflect.EnumDescriptor

func (AnnotationType) Enum Uses

func (x AnnotationType) Enum() *AnnotationType

func (AnnotationType) EnumDescriptor Uses

func (AnnotationType) EnumDescriptor() ([]byte, []int)

Deprecated: Use AnnotationType.Descriptor instead.

func (AnnotationType) Number Uses

func (x AnnotationType) Number() protoreflect.EnumNumber

func (AnnotationType) String Uses

func (x AnnotationType) String() string

func (AnnotationType) Type Uses

func (AnnotationType) Type() protoreflect.EnumType

type Annotation_Transcript Uses

type Annotation_Transcript struct {
    // A transcript value represents the assertion that a particular region of
    // the reference genome may be transcribed as RNA. An alternative splicing
    // pattern would be represented as a separate transcript object. This field
    // is only set for annotations of type `TRANSCRIPT`.
    Transcript *Transcript `protobuf:"bytes,11,opt,name=transcript,proto3,oneof"`
}

type Annotation_Variant Uses

type Annotation_Variant struct {
    // A variant annotation, which describes the effect of a variant on the
    // genome, the coding sequence, and/or higher level consequences at the
    // organism level e.g. pathogenicity. This field is only set for annotations
    // of type `VARIANT`.
    Variant *VariantAnnotation `protobuf:"bytes,10,opt,name=variant,proto3,oneof"`
}

type BatchCreateAnnotationsRequest Uses

type BatchCreateAnnotationsRequest struct {

    // The annotations to be created. At most 4096 can be specified in a single
    // request.
    Annotations []*Annotation `protobuf:"bytes,1,rep,name=annotations,proto3" json:"annotations,omitempty"`
    // A unique request ID which enables the server to detect duplicated requests.
    // If provided, duplicated requests will result in the same response; if not
    // provided, duplicated requests may result in duplicated data. For a given
    // annotation set, callers should not reuse `request_id`s when writing
    // different batches of annotations - behavior in this case is undefined.
    // A common approach is to use a UUID. For batch jobs where worker crashes are
    // a possibility, consider using some unique variant of a worker or run ID.
    RequestId string `protobuf:"bytes,2,opt,name=request_id,json=requestId,proto3" json:"request_id,omitempty"`
    // contains filtered or unexported fields
}

func (*BatchCreateAnnotationsRequest) Descriptor Uses

func (*BatchCreateAnnotationsRequest) Descriptor() ([]byte, []int)

Deprecated: Use BatchCreateAnnotationsRequest.ProtoReflect.Descriptor instead.

func (*BatchCreateAnnotationsRequest) GetAnnotations Uses

func (x *BatchCreateAnnotationsRequest) GetAnnotations() []*Annotation

func (*BatchCreateAnnotationsRequest) GetRequestId Uses

func (x *BatchCreateAnnotationsRequest) GetRequestId() string

func (*BatchCreateAnnotationsRequest) ProtoMessage Uses

func (*BatchCreateAnnotationsRequest) ProtoMessage()

func (*BatchCreateAnnotationsRequest) ProtoReflect Uses

func (x *BatchCreateAnnotationsRequest) ProtoReflect() protoreflect.Message

func (*BatchCreateAnnotationsRequest) Reset Uses

func (x *BatchCreateAnnotationsRequest) Reset()

func (*BatchCreateAnnotationsRequest) String Uses

func (x *BatchCreateAnnotationsRequest) String() string

type BatchCreateAnnotationsResponse Uses

type BatchCreateAnnotationsResponse struct {

    // The resulting per-annotation entries, ordered consistently with the
    // original request.
    Entries []*BatchCreateAnnotationsResponse_Entry `protobuf:"bytes,1,rep,name=entries,proto3" json:"entries,omitempty"`
    // contains filtered or unexported fields
}

func (*BatchCreateAnnotationsResponse) Descriptor Uses

func (*BatchCreateAnnotationsResponse) Descriptor() ([]byte, []int)

Deprecated: Use BatchCreateAnnotationsResponse.ProtoReflect.Descriptor instead.

func (*BatchCreateAnnotationsResponse) GetEntries Uses

func (x *BatchCreateAnnotationsResponse) GetEntries() []*BatchCreateAnnotationsResponse_Entry

func (*BatchCreateAnnotationsResponse) ProtoMessage Uses

func (*BatchCreateAnnotationsResponse) ProtoMessage()

func (*BatchCreateAnnotationsResponse) ProtoReflect Uses

func (x *BatchCreateAnnotationsResponse) ProtoReflect() protoreflect.Message

func (*BatchCreateAnnotationsResponse) Reset Uses

func (x *BatchCreateAnnotationsResponse) Reset()

func (*BatchCreateAnnotationsResponse) String Uses

func (x *BatchCreateAnnotationsResponse) String() string

type BatchCreateAnnotationsResponse_Entry Uses

type BatchCreateAnnotationsResponse_Entry struct {

    // The creation status.
    Status *status.Status `protobuf:"bytes,1,opt,name=status,proto3" json:"status,omitempty"`
    // The created annotation, if creation was successful.
    Annotation *Annotation `protobuf:"bytes,2,opt,name=annotation,proto3" json:"annotation,omitempty"`
    // contains filtered or unexported fields
}

func (*BatchCreateAnnotationsResponse_Entry) Descriptor Uses

func (*BatchCreateAnnotationsResponse_Entry) Descriptor() ([]byte, []int)

Deprecated: Use BatchCreateAnnotationsResponse_Entry.ProtoReflect.Descriptor instead.

func (*BatchCreateAnnotationsResponse_Entry) GetAnnotation Uses

func (x *BatchCreateAnnotationsResponse_Entry) GetAnnotation() *Annotation

func (*BatchCreateAnnotationsResponse_Entry) GetStatus Uses

func (x *BatchCreateAnnotationsResponse_Entry) GetStatus() *status.Status

func (*BatchCreateAnnotationsResponse_Entry) ProtoMessage Uses

func (*BatchCreateAnnotationsResponse_Entry) ProtoMessage()

func (*BatchCreateAnnotationsResponse_Entry) ProtoReflect Uses

func (x *BatchCreateAnnotationsResponse_Entry) ProtoReflect() protoreflect.Message

func (*BatchCreateAnnotationsResponse_Entry) Reset Uses

func (x *BatchCreateAnnotationsResponse_Entry) Reset()

func (*BatchCreateAnnotationsResponse_Entry) String Uses

func (x *BatchCreateAnnotationsResponse_Entry) String() string

type CallSet Uses

type CallSet struct {

    // The server-generated call set ID, unique across all call sets.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The call set name.
    Name string `protobuf:"bytes,2,opt,name=name,proto3" json:"name,omitempty"`
    // The sample ID this call set corresponds to.
    SampleId string `protobuf:"bytes,7,opt,name=sample_id,json=sampleId,proto3" json:"sample_id,omitempty"`
    // The IDs of the variant sets this call set belongs to. This field must
    // have exactly length one, as a call set belongs to a single variant set.
    // This field is repeated for compatibility with the
    // [GA4GH 0.5.1
    // API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
    VariantSetIds []string `protobuf:"bytes,6,rep,name=variant_set_ids,json=variantSetIds,proto3" json:"variant_set_ids,omitempty"`
    // The date this call set was created in milliseconds from the epoch.
    Created int64 `protobuf:"varint,5,opt,name=created,proto3" json:"created,omitempty"`
    // A map of additional call set information. This must be of the form
    // map<string, string[]> (string key mapping to a list of string values).
    Info map[string]*_struct.ListValue `protobuf:"bytes,4,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

A call set is a collection of variant calls, typically for one sample. It belongs to a variant set.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*CallSet) Descriptor Uses

func (*CallSet) Descriptor() ([]byte, []int)

Deprecated: Use CallSet.ProtoReflect.Descriptor instead.

func (*CallSet) GetCreated Uses

func (x *CallSet) GetCreated() int64

func (*CallSet) GetId Uses

func (x *CallSet) GetId() string

func (*CallSet) GetInfo Uses

func (x *CallSet) GetInfo() map[string]*_struct.ListValue

func (*CallSet) GetName Uses

func (x *CallSet) GetName() string

func (*CallSet) GetSampleId Uses

func (x *CallSet) GetSampleId() string

func (*CallSet) GetVariantSetIds Uses

func (x *CallSet) GetVariantSetIds() []string

func (*CallSet) ProtoMessage Uses

func (*CallSet) ProtoMessage()

func (*CallSet) ProtoReflect Uses

func (x *CallSet) ProtoReflect() protoreflect.Message

func (*CallSet) Reset Uses

func (x *CallSet) Reset()

func (*CallSet) String Uses

func (x *CallSet) String() string

type CigarUnit Uses

type CigarUnit struct {
    Operation CigarUnit_Operation `protobuf:"varint,1,opt,name=operation,proto3,enum=google.genomics.v1.CigarUnit_Operation" json:"operation,omitempty"`
    // The number of genomic bases that the operation runs for. Required.
    OperationLength int64 `protobuf:"varint,2,opt,name=operation_length,json=operationLength,proto3" json:"operation_length,omitempty"`
    // `referenceSequence` is only used at mismatches
    // (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
    // Filling this field replaces SAM's MD tag. If the relevant information is
    // not available, this field is unset.
    ReferenceSequence string `protobuf:"bytes,3,opt,name=reference_sequence,json=referenceSequence,proto3" json:"reference_sequence,omitempty"`
    // contains filtered or unexported fields
}

A single CIGAR operation.

func (*CigarUnit) Descriptor Uses

func (*CigarUnit) Descriptor() ([]byte, []int)

Deprecated: Use CigarUnit.ProtoReflect.Descriptor instead.

func (*CigarUnit) GetOperation Uses

func (x *CigarUnit) GetOperation() CigarUnit_Operation

func (*CigarUnit) GetOperationLength Uses

func (x *CigarUnit) GetOperationLength() int64

func (*CigarUnit) GetReferenceSequence Uses

func (x *CigarUnit) GetReferenceSequence() string

func (*CigarUnit) ProtoMessage Uses

func (*CigarUnit) ProtoMessage()

func (*CigarUnit) ProtoReflect Uses

func (x *CigarUnit) ProtoReflect() protoreflect.Message

func (*CigarUnit) Reset Uses

func (x *CigarUnit) Reset()

func (*CigarUnit) String Uses

func (x *CigarUnit) String() string

type CigarUnit_Operation Uses

type CigarUnit_Operation int32

Describes the different types of CIGAR alignment operations that exist. Used wherever CIGAR alignments are used.

const (
    CigarUnit_OPERATION_UNSPECIFIED CigarUnit_Operation = 0
    // An alignment match indicates that a sequence can be aligned to the
    // reference without evidence of an INDEL. Unlike the
    // `SEQUENCE_MATCH` and `SEQUENCE_MISMATCH` operators,
    // the `ALIGNMENT_MATCH` operator does not indicate whether the
    // reference and read sequences are an exact match. This operator is
    // equivalent to SAM's `M`.
    CigarUnit_ALIGNMENT_MATCH CigarUnit_Operation = 1
    // The insert operator indicates that the read contains evidence of bases
    // being inserted into the reference. This operator is equivalent to SAM's
    // `I`.
    CigarUnit_INSERT CigarUnit_Operation = 2
    // The delete operator indicates that the read contains evidence of bases
    // being deleted from the reference. This operator is equivalent to SAM's
    // `D`.
    CigarUnit_DELETE CigarUnit_Operation = 3
    // The skip operator indicates that this read skips a long segment of the
    // reference, but the bases have not been deleted. This operator is commonly
    // used when working with RNA-seq data, where reads may skip long segments
    // of the reference between exons. This operator is equivalent to SAM's
    // `N`.
    CigarUnit_SKIP CigarUnit_Operation = 4
    // The soft clip operator indicates that bases at the start/end of a read
    // have not been considered during alignment. This may occur if the majority
    // of a read maps, except for low quality bases at the start/end of a read.
    // This operator is equivalent to SAM's `S`. Bases that are soft
    // clipped will still be stored in the read.
    CigarUnit_CLIP_SOFT CigarUnit_Operation = 5
    // The hard clip operator indicates that bases at the start/end of a read
    // have been omitted from this alignment. This may occur if this linear
    // alignment is part of a chimeric alignment, or if the read has been
    // trimmed (for example, during error correction or to trim poly-A tails for
    // RNA-seq). This operator is equivalent to SAM's `H`.
    CigarUnit_CLIP_HARD CigarUnit_Operation = 6
    // The pad operator indicates that there is padding in an alignment. This
    // operator is equivalent to SAM's `P`.
    CigarUnit_PAD CigarUnit_Operation = 7
    // This operator indicates that this portion of the aligned sequence exactly
    // matches the reference. This operator is equivalent to SAM's `=`.
    CigarUnit_SEQUENCE_MATCH CigarUnit_Operation = 8
    // This operator indicates that this portion of the aligned sequence is an
    // alignment match to the reference, but a sequence mismatch. This can
    // indicate a SNP or a read error. This operator is equivalent to SAM's
    // `X`.
    CigarUnit_SEQUENCE_MISMATCH CigarUnit_Operation = 9
)

func (CigarUnit_Operation) Descriptor Uses

func (CigarUnit_Operation) Descriptor() protoreflect.EnumDescriptor

func (CigarUnit_Operation) Enum Uses

func (x CigarUnit_Operation) Enum() *CigarUnit_Operation

func (CigarUnit_Operation) EnumDescriptor Uses

func (CigarUnit_Operation) EnumDescriptor() ([]byte, []int)

Deprecated: Use CigarUnit_Operation.Descriptor instead.

func (CigarUnit_Operation) Number Uses

func (x CigarUnit_Operation) Number() protoreflect.EnumNumber

func (CigarUnit_Operation) String Uses

func (x CigarUnit_Operation) String() string

func (CigarUnit_Operation) Type Uses

func (CigarUnit_Operation) Type() protoreflect.EnumType

type CoverageBucket Uses

type CoverageBucket struct {

    // The genomic coordinate range spanned by this bucket.
    Range *Range `protobuf:"bytes,1,opt,name=range,proto3" json:"range,omitempty"`
    // The average number of reads which are aligned to each individual
    // reference base in this bucket.
    MeanCoverage float32 `protobuf:"fixed32,2,opt,name=mean_coverage,json=meanCoverage,proto3" json:"mean_coverage,omitempty"`
    // contains filtered or unexported fields
}

A bucket over which read coverage has been precomputed. A bucket corresponds to a specific range of the reference sequence.

func (*CoverageBucket) Descriptor Uses

func (*CoverageBucket) Descriptor() ([]byte, []int)

Deprecated: Use CoverageBucket.ProtoReflect.Descriptor instead.

func (*CoverageBucket) GetMeanCoverage Uses

func (x *CoverageBucket) GetMeanCoverage() float32

func (*CoverageBucket) GetRange Uses

func (x *CoverageBucket) GetRange() *Range

func (*CoverageBucket) ProtoMessage Uses

func (*CoverageBucket) ProtoMessage()

func (*CoverageBucket) ProtoReflect Uses

func (x *CoverageBucket) ProtoReflect() protoreflect.Message

func (*CoverageBucket) Reset Uses

func (x *CoverageBucket) Reset()

func (*CoverageBucket) String Uses

func (x *CoverageBucket) String() string

type CreateAnnotationRequest Uses

type CreateAnnotationRequest struct {

    // The annotation to be created.
    Annotation *Annotation `protobuf:"bytes,1,opt,name=annotation,proto3" json:"annotation,omitempty"`
    // contains filtered or unexported fields
}

func (*CreateAnnotationRequest) Descriptor Uses

func (*CreateAnnotationRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateAnnotationRequest.ProtoReflect.Descriptor instead.

func (*CreateAnnotationRequest) GetAnnotation Uses

func (x *CreateAnnotationRequest) GetAnnotation() *Annotation

func (*CreateAnnotationRequest) ProtoMessage Uses

func (*CreateAnnotationRequest) ProtoMessage()

func (*CreateAnnotationRequest) ProtoReflect Uses

func (x *CreateAnnotationRequest) ProtoReflect() protoreflect.Message

func (*CreateAnnotationRequest) Reset Uses

func (x *CreateAnnotationRequest) Reset()

func (*CreateAnnotationRequest) String Uses

func (x *CreateAnnotationRequest) String() string

type CreateAnnotationSetRequest Uses

type CreateAnnotationSetRequest struct {

    // The annotation set to create.
    AnnotationSet *AnnotationSet `protobuf:"bytes,1,opt,name=annotation_set,json=annotationSet,proto3" json:"annotation_set,omitempty"`
    // contains filtered or unexported fields
}

func (*CreateAnnotationSetRequest) Descriptor Uses

func (*CreateAnnotationSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateAnnotationSetRequest.ProtoReflect.Descriptor instead.

func (*CreateAnnotationSetRequest) GetAnnotationSet Uses

func (x *CreateAnnotationSetRequest) GetAnnotationSet() *AnnotationSet

func (*CreateAnnotationSetRequest) ProtoMessage Uses

func (*CreateAnnotationSetRequest) ProtoMessage()

func (*CreateAnnotationSetRequest) ProtoReflect Uses

func (x *CreateAnnotationSetRequest) ProtoReflect() protoreflect.Message

func (*CreateAnnotationSetRequest) Reset Uses

func (x *CreateAnnotationSetRequest) Reset()

func (*CreateAnnotationSetRequest) String Uses

func (x *CreateAnnotationSetRequest) String() string

type CreateCallSetRequest Uses

type CreateCallSetRequest struct {

    // The call set to be created.
    CallSet *CallSet `protobuf:"bytes,1,opt,name=call_set,json=callSet,proto3" json:"call_set,omitempty"`
    // contains filtered or unexported fields
}

func (*CreateCallSetRequest) Descriptor Uses

func (*CreateCallSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateCallSetRequest.ProtoReflect.Descriptor instead.

func (*CreateCallSetRequest) GetCallSet Uses

func (x *CreateCallSetRequest) GetCallSet() *CallSet

func (*CreateCallSetRequest) ProtoMessage Uses

func (*CreateCallSetRequest) ProtoMessage()

func (*CreateCallSetRequest) ProtoReflect Uses

func (x *CreateCallSetRequest) ProtoReflect() protoreflect.Message

func (*CreateCallSetRequest) Reset Uses

func (x *CreateCallSetRequest) Reset()

func (*CreateCallSetRequest) String Uses

func (x *CreateCallSetRequest) String() string

type CreateDatasetRequest Uses

type CreateDatasetRequest struct {

    // The dataset to be created. Must contain projectId and name.
    Dataset *Dataset `protobuf:"bytes,1,opt,name=dataset,proto3" json:"dataset,omitempty"`
    // contains filtered or unexported fields
}

func (*CreateDatasetRequest) Descriptor Uses

func (*CreateDatasetRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateDatasetRequest.ProtoReflect.Descriptor instead.

func (*CreateDatasetRequest) GetDataset Uses

func (x *CreateDatasetRequest) GetDataset() *Dataset

func (*CreateDatasetRequest) ProtoMessage Uses

func (*CreateDatasetRequest) ProtoMessage()

func (*CreateDatasetRequest) ProtoReflect Uses

func (x *CreateDatasetRequest) ProtoReflect() protoreflect.Message

func (*CreateDatasetRequest) Reset Uses

func (x *CreateDatasetRequest) Reset()

func (*CreateDatasetRequest) String Uses

func (x *CreateDatasetRequest) String() string

type CreateVariantRequest Uses

type CreateVariantRequest struct {

    // The variant to be created.
    Variant *Variant `protobuf:"bytes,1,opt,name=variant,proto3" json:"variant,omitempty"`
    // contains filtered or unexported fields
}

func (*CreateVariantRequest) Descriptor Uses

func (*CreateVariantRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateVariantRequest.ProtoReflect.Descriptor instead.

func (*CreateVariantRequest) GetVariant Uses

func (x *CreateVariantRequest) GetVariant() *Variant

func (*CreateVariantRequest) ProtoMessage Uses

func (*CreateVariantRequest) ProtoMessage()

func (*CreateVariantRequest) ProtoReflect Uses

func (x *CreateVariantRequest) ProtoReflect() protoreflect.Message

func (*CreateVariantRequest) Reset Uses

func (x *CreateVariantRequest) Reset()

func (*CreateVariantRequest) String Uses

func (x *CreateVariantRequest) String() string

type CreateVariantSetRequest Uses

type CreateVariantSetRequest struct {

    // Required. The variant set to be created. Must have a valid `datasetId`.
    VariantSet *VariantSet `protobuf:"bytes,1,opt,name=variant_set,json=variantSet,proto3" json:"variant_set,omitempty"`
    // contains filtered or unexported fields
}

The CreateVariantSet request

func (*CreateVariantSetRequest) Descriptor Uses

func (*CreateVariantSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use CreateVariantSetRequest.ProtoReflect.Descriptor instead.

func (*CreateVariantSetRequest) GetVariantSet Uses

func (x *CreateVariantSetRequest) GetVariantSet() *VariantSet

func (*CreateVariantSetRequest) ProtoMessage Uses

func (*CreateVariantSetRequest) ProtoMessage()

func (*CreateVariantSetRequest) ProtoReflect Uses

func (x *CreateVariantSetRequest) ProtoReflect() protoreflect.Message

func (*CreateVariantSetRequest) Reset Uses

func (x *CreateVariantSetRequest) Reset()

func (*CreateVariantSetRequest) String Uses

func (x *CreateVariantSetRequest) String() string

type Dataset Uses

type Dataset struct {

    // The server-generated dataset ID, unique across all datasets.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The Google Cloud project ID that this dataset belongs to.
    ProjectId string `protobuf:"bytes,2,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // The dataset name.
    Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
    // The time this dataset was created, in seconds from the epoch.
    CreateTime *timestamp.Timestamp `protobuf:"bytes,4,opt,name=create_time,json=createTime,proto3" json:"create_time,omitempty"`
    // contains filtered or unexported fields
}

A Dataset is a collection of genomic data.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*Dataset) Descriptor Uses

func (*Dataset) Descriptor() ([]byte, []int)

Deprecated: Use Dataset.ProtoReflect.Descriptor instead.

func (*Dataset) GetCreateTime Uses

func (x *Dataset) GetCreateTime() *timestamp.Timestamp

func (*Dataset) GetId Uses

func (x *Dataset) GetId() string

func (*Dataset) GetName Uses

func (x *Dataset) GetName() string

func (*Dataset) GetProjectId Uses

func (x *Dataset) GetProjectId() string

func (*Dataset) ProtoMessage Uses

func (*Dataset) ProtoMessage()

func (*Dataset) ProtoReflect Uses

func (x *Dataset) ProtoReflect() protoreflect.Message

func (*Dataset) Reset Uses

func (x *Dataset) Reset()

func (*Dataset) String Uses

func (x *Dataset) String() string

type DatasetServiceV1Client Uses

type DatasetServiceV1Client interface {
    // Lists datasets within a project.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    ListDatasets(ctx context.Context, in *ListDatasetsRequest, opts ...grpc.CallOption) (*ListDatasetsResponse, error)
    // Creates a new dataset.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    CreateDataset(ctx context.Context, in *CreateDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
    // Gets a dataset by ID.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    GetDataset(ctx context.Context, in *GetDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
    // Updates a dataset.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // This method supports patch semantics.
    UpdateDataset(ctx context.Context, in *UpdateDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
    // Deletes a dataset and all of its contents (all read group sets,
    // reference sets, variant sets, call sets, annotation sets, etc.)
    // This is reversible (up to one week after the deletion) via
    // the
    // [datasets.undelete][google.genomics.v1.DatasetServiceV1.UndeleteDataset]
    // operation.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    DeleteDataset(ctx context.Context, in *DeleteDatasetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
    // Undeletes a dataset by restoring a dataset which was deleted via this API.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // This operation is only possible for a week after the deletion occurred.
    UndeleteDataset(ctx context.Context, in *UndeleteDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
    // Sets the access control policy on the specified dataset. Replaces any
    // existing policy.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
    // Policy</a> for more information.
    SetIamPolicy(ctx context.Context, in *v1.SetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error)
    // Gets the access control policy for the dataset. This is empty if the
    // policy or resource does not exist.
    //
    // See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a
    // Policy</a> for more information.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    GetIamPolicy(ctx context.Context, in *v1.GetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error)
    // Returns permissions that a caller has on the specified resource.
    // See <a href="/iam/docs/managing-policies#testing_permissions">Testing
    // Permissions</a> for more information.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    TestIamPermissions(ctx context.Context, in *v1.TestIamPermissionsRequest, opts ...grpc.CallOption) (*v1.TestIamPermissionsResponse, error)
}

DatasetServiceV1Client is the client API for DatasetServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewDatasetServiceV1Client Uses

func NewDatasetServiceV1Client(cc grpc.ClientConnInterface) DatasetServiceV1Client

type DatasetServiceV1Server Uses

type DatasetServiceV1Server interface {
    // Lists datasets within a project.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    ListDatasets(context.Context, *ListDatasetsRequest) (*ListDatasetsResponse, error)
    // Creates a new dataset.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    CreateDataset(context.Context, *CreateDatasetRequest) (*Dataset, error)
    // Gets a dataset by ID.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    GetDataset(context.Context, *GetDatasetRequest) (*Dataset, error)
    // Updates a dataset.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // This method supports patch semantics.
    UpdateDataset(context.Context, *UpdateDatasetRequest) (*Dataset, error)
    // Deletes a dataset and all of its contents (all read group sets,
    // reference sets, variant sets, call sets, annotation sets, etc.)
    // This is reversible (up to one week after the deletion) via
    // the
    // [datasets.undelete][google.genomics.v1.DatasetServiceV1.UndeleteDataset]
    // operation.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    DeleteDataset(context.Context, *DeleteDatasetRequest) (*empty.Empty, error)
    // Undeletes a dataset by restoring a dataset which was deleted via this API.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // This operation is only possible for a week after the deletion occurred.
    UndeleteDataset(context.Context, *UndeleteDatasetRequest) (*Dataset, error)
    // Sets the access control policy on the specified dataset. Replaces any
    // existing policy.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
    // Policy</a> for more information.
    SetIamPolicy(context.Context, *v1.SetIamPolicyRequest) (*v1.Policy, error)
    // Gets the access control policy for the dataset. This is empty if the
    // policy or resource does not exist.
    //
    // See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a
    // Policy</a> for more information.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    GetIamPolicy(context.Context, *v1.GetIamPolicyRequest) (*v1.Policy, error)
    // Returns permissions that a caller has on the specified resource.
    // See <a href="/iam/docs/managing-policies#testing_permissions">Testing
    // Permissions</a> for more information.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    TestIamPermissions(context.Context, *v1.TestIamPermissionsRequest) (*v1.TestIamPermissionsResponse, error)
}

DatasetServiceV1Server is the server API for DatasetServiceV1 service.

type DeleteAnnotationRequest Uses

type DeleteAnnotationRequest struct {

    // The ID of the annotation to be deleted.
    AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
    // contains filtered or unexported fields
}

func (*DeleteAnnotationRequest) Descriptor Uses

func (*DeleteAnnotationRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteAnnotationRequest.ProtoReflect.Descriptor instead.

func (*DeleteAnnotationRequest) GetAnnotationId Uses

func (x *DeleteAnnotationRequest) GetAnnotationId() string

func (*DeleteAnnotationRequest) ProtoMessage Uses

func (*DeleteAnnotationRequest) ProtoMessage()

func (*DeleteAnnotationRequest) ProtoReflect Uses

func (x *DeleteAnnotationRequest) ProtoReflect() protoreflect.Message

func (*DeleteAnnotationRequest) Reset Uses

func (x *DeleteAnnotationRequest) Reset()

func (*DeleteAnnotationRequest) String Uses

func (x *DeleteAnnotationRequest) String() string

type DeleteAnnotationSetRequest Uses

type DeleteAnnotationSetRequest struct {

    // The ID of the annotation set to be deleted.
    AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
    // contains filtered or unexported fields
}

func (*DeleteAnnotationSetRequest) Descriptor Uses

func (*DeleteAnnotationSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteAnnotationSetRequest.ProtoReflect.Descriptor instead.

func (*DeleteAnnotationSetRequest) GetAnnotationSetId Uses

func (x *DeleteAnnotationSetRequest) GetAnnotationSetId() string

func (*DeleteAnnotationSetRequest) ProtoMessage Uses

func (*DeleteAnnotationSetRequest) ProtoMessage()

func (*DeleteAnnotationSetRequest) ProtoReflect Uses

func (x *DeleteAnnotationSetRequest) ProtoReflect() protoreflect.Message

func (*DeleteAnnotationSetRequest) Reset Uses

func (x *DeleteAnnotationSetRequest) Reset()

func (*DeleteAnnotationSetRequest) String Uses

func (x *DeleteAnnotationSetRequest) String() string

type DeleteCallSetRequest Uses

type DeleteCallSetRequest struct {

    // The ID of the call set to be deleted.
    CallSetId string `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId,proto3" json:"call_set_id,omitempty"`
    // contains filtered or unexported fields
}

func (*DeleteCallSetRequest) Descriptor Uses

func (*DeleteCallSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteCallSetRequest.ProtoReflect.Descriptor instead.

func (*DeleteCallSetRequest) GetCallSetId Uses

func (x *DeleteCallSetRequest) GetCallSetId() string

func (*DeleteCallSetRequest) ProtoMessage Uses

func (*DeleteCallSetRequest) ProtoMessage()

func (*DeleteCallSetRequest) ProtoReflect Uses

func (x *DeleteCallSetRequest) ProtoReflect() protoreflect.Message

func (*DeleteCallSetRequest) Reset Uses

func (x *DeleteCallSetRequest) Reset()

func (*DeleteCallSetRequest) String Uses

func (x *DeleteCallSetRequest) String() string

type DeleteDatasetRequest Uses

type DeleteDatasetRequest struct {

    // The ID of the dataset to be deleted.
    DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    // contains filtered or unexported fields
}

func (*DeleteDatasetRequest) Descriptor Uses

func (*DeleteDatasetRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteDatasetRequest.ProtoReflect.Descriptor instead.

func (*DeleteDatasetRequest) GetDatasetId Uses

func (x *DeleteDatasetRequest) GetDatasetId() string

func (*DeleteDatasetRequest) ProtoMessage Uses

func (*DeleteDatasetRequest) ProtoMessage()

func (*DeleteDatasetRequest) ProtoReflect Uses

func (x *DeleteDatasetRequest) ProtoReflect() protoreflect.Message

func (*DeleteDatasetRequest) Reset Uses

func (x *DeleteDatasetRequest) Reset()

func (*DeleteDatasetRequest) String Uses

func (x *DeleteDatasetRequest) String() string

type DeleteReadGroupSetRequest Uses

type DeleteReadGroupSetRequest struct {

    // The ID of the read group set to be deleted. The caller must have WRITE
    // permissions to the dataset associated with this read group set.
    ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // contains filtered or unexported fields
}

func (*DeleteReadGroupSetRequest) Descriptor Uses

func (*DeleteReadGroupSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteReadGroupSetRequest.ProtoReflect.Descriptor instead.

func (*DeleteReadGroupSetRequest) GetReadGroupSetId Uses

func (x *DeleteReadGroupSetRequest) GetReadGroupSetId() string

func (*DeleteReadGroupSetRequest) ProtoMessage Uses

func (*DeleteReadGroupSetRequest) ProtoMessage()

func (*DeleteReadGroupSetRequest) ProtoReflect Uses

func (x *DeleteReadGroupSetRequest) ProtoReflect() protoreflect.Message

func (*DeleteReadGroupSetRequest) Reset Uses

func (x *DeleteReadGroupSetRequest) Reset()

func (*DeleteReadGroupSetRequest) String Uses

func (x *DeleteReadGroupSetRequest) String() string

type DeleteVariantRequest Uses

type DeleteVariantRequest struct {

    // The ID of the variant to be deleted.
    VariantId string `protobuf:"bytes,1,opt,name=variant_id,json=variantId,proto3" json:"variant_id,omitempty"`
    // contains filtered or unexported fields
}

func (*DeleteVariantRequest) Descriptor Uses

func (*DeleteVariantRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteVariantRequest.ProtoReflect.Descriptor instead.

func (*DeleteVariantRequest) GetVariantId Uses

func (x *DeleteVariantRequest) GetVariantId() string

func (*DeleteVariantRequest) ProtoMessage Uses

func (*DeleteVariantRequest) ProtoMessage()

func (*DeleteVariantRequest) ProtoReflect Uses

func (x *DeleteVariantRequest) ProtoReflect() protoreflect.Message

func (*DeleteVariantRequest) Reset Uses

func (x *DeleteVariantRequest) Reset()

func (*DeleteVariantRequest) String Uses

func (x *DeleteVariantRequest) String() string

type DeleteVariantSetRequest Uses

type DeleteVariantSetRequest struct {

    // The ID of the variant set to be deleted.
    VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
    // contains filtered or unexported fields
}

The delete variant set request.

func (*DeleteVariantSetRequest) Descriptor Uses

func (*DeleteVariantSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use DeleteVariantSetRequest.ProtoReflect.Descriptor instead.

func (*DeleteVariantSetRequest) GetVariantSetId Uses

func (x *DeleteVariantSetRequest) GetVariantSetId() string

func (*DeleteVariantSetRequest) ProtoMessage Uses

func (*DeleteVariantSetRequest) ProtoMessage()

func (*DeleteVariantSetRequest) ProtoReflect Uses

func (x *DeleteVariantSetRequest) ProtoReflect() protoreflect.Message

func (*DeleteVariantSetRequest) Reset Uses

func (x *DeleteVariantSetRequest) Reset()

func (*DeleteVariantSetRequest) String Uses

func (x *DeleteVariantSetRequest) String() string

type ExportReadGroupSetRequest Uses

type ExportReadGroupSetRequest struct {

    // Required. The Google Cloud project ID that owns this
    // export. The caller must have WRITE access to this project.
    ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // Required. A Google Cloud Storage URI for the exported BAM file.
    // The currently authenticated user must have write access to the new file.
    // An error will be returned if the URI already contains data.
    ExportUri string `protobuf:"bytes,2,opt,name=export_uri,json=exportUri,proto3" json:"export_uri,omitempty"`
    // Required. The ID of the read group set to export. The caller must have
    // READ access to this read group set.
    ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // The reference names to export. If this is not specified, all reference
    // sequences, including unmapped reads, are exported.
    // Use `*` to export only unmapped reads.
    ReferenceNames []string `protobuf:"bytes,4,rep,name=reference_names,json=referenceNames,proto3" json:"reference_names,omitempty"`
    // contains filtered or unexported fields
}

The read group set export request.

func (*ExportReadGroupSetRequest) Descriptor Uses

func (*ExportReadGroupSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use ExportReadGroupSetRequest.ProtoReflect.Descriptor instead.

func (*ExportReadGroupSetRequest) GetExportUri Uses

func (x *ExportReadGroupSetRequest) GetExportUri() string

func (*ExportReadGroupSetRequest) GetProjectId Uses

func (x *ExportReadGroupSetRequest) GetProjectId() string

func (*ExportReadGroupSetRequest) GetReadGroupSetId Uses

func (x *ExportReadGroupSetRequest) GetReadGroupSetId() string

func (*ExportReadGroupSetRequest) GetReferenceNames Uses

func (x *ExportReadGroupSetRequest) GetReferenceNames() []string

func (*ExportReadGroupSetRequest) ProtoMessage Uses

func (*ExportReadGroupSetRequest) ProtoMessage()

func (*ExportReadGroupSetRequest) ProtoReflect Uses

func (x *ExportReadGroupSetRequest) ProtoReflect() protoreflect.Message

func (*ExportReadGroupSetRequest) Reset Uses

func (x *ExportReadGroupSetRequest) Reset()

func (*ExportReadGroupSetRequest) String Uses

func (x *ExportReadGroupSetRequest) String() string

type ExportVariantSetRequest Uses

type ExportVariantSetRequest struct {

    // Required. The ID of the variant set that contains variant data which
    // should be exported. The caller must have READ access to this variant set.
    VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
    // If provided, only variant call information from the specified call sets
    // will be exported. By default all variant calls are exported.
    CallSetIds []string `protobuf:"bytes,2,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
    // Required. The Google Cloud project ID that owns the destination
    // BigQuery dataset. The caller must have WRITE access to this project.  This
    // project will also own the resulting export job.
    ProjectId string `protobuf:"bytes,3,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // The format for the exported data.
    Format ExportVariantSetRequest_Format `protobuf:"varint,4,opt,name=format,proto3,enum=google.genomics.v1.ExportVariantSetRequest_Format" json:"format,omitempty"`
    // Required. The BigQuery dataset to export data to. This dataset must already
    // exist. Note that this is distinct from the Genomics concept of "dataset".
    BigqueryDataset string `protobuf:"bytes,5,opt,name=bigquery_dataset,json=bigqueryDataset,proto3" json:"bigquery_dataset,omitempty"`
    // Required. The BigQuery table to export data to.
    // If the table doesn't exist, it will be created. If it already exists, it
    // will be overwritten.
    BigqueryTable string `protobuf:"bytes,6,opt,name=bigquery_table,json=bigqueryTable,proto3" json:"bigquery_table,omitempty"`
    // contains filtered or unexported fields
}

The variant data export request.

func (*ExportVariantSetRequest) Descriptor Uses

func (*ExportVariantSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use ExportVariantSetRequest.ProtoReflect.Descriptor instead.

func (*ExportVariantSetRequest) GetBigqueryDataset Uses

func (x *ExportVariantSetRequest) GetBigqueryDataset() string

func (*ExportVariantSetRequest) GetBigqueryTable Uses

func (x *ExportVariantSetRequest) GetBigqueryTable() string

func (*ExportVariantSetRequest) GetCallSetIds Uses

func (x *ExportVariantSetRequest) GetCallSetIds() []string

func (*ExportVariantSetRequest) GetFormat Uses

func (x *ExportVariantSetRequest) GetFormat() ExportVariantSetRequest_Format

func (*ExportVariantSetRequest) GetProjectId Uses

func (x *ExportVariantSetRequest) GetProjectId() string

func (*ExportVariantSetRequest) GetVariantSetId Uses

func (x *ExportVariantSetRequest) GetVariantSetId() string

func (*ExportVariantSetRequest) ProtoMessage Uses

func (*ExportVariantSetRequest) ProtoMessage()

func (*ExportVariantSetRequest) ProtoReflect Uses

func (x *ExportVariantSetRequest) ProtoReflect() protoreflect.Message

func (*ExportVariantSetRequest) Reset Uses

func (x *ExportVariantSetRequest) Reset()

func (*ExportVariantSetRequest) String Uses

func (x *ExportVariantSetRequest) String() string

type ExportVariantSetRequest_Format Uses

type ExportVariantSetRequest_Format int32
const (
    ExportVariantSetRequest_FORMAT_UNSPECIFIED ExportVariantSetRequest_Format = 0
    // Export the data to Google BigQuery.
    ExportVariantSetRequest_FORMAT_BIGQUERY ExportVariantSetRequest_Format = 1
)

func (ExportVariantSetRequest_Format) Descriptor Uses

func (ExportVariantSetRequest_Format) Descriptor() protoreflect.EnumDescriptor

func (ExportVariantSetRequest_Format) Enum Uses

func (x ExportVariantSetRequest_Format) Enum() *ExportVariantSetRequest_Format

func (ExportVariantSetRequest_Format) EnumDescriptor Uses

func (ExportVariantSetRequest_Format) EnumDescriptor() ([]byte, []int)

Deprecated: Use ExportVariantSetRequest_Format.Descriptor instead.

func (ExportVariantSetRequest_Format) Number Uses

func (x ExportVariantSetRequest_Format) Number() protoreflect.EnumNumber

func (ExportVariantSetRequest_Format) String Uses

func (x ExportVariantSetRequest_Format) String() string

func (ExportVariantSetRequest_Format) Type Uses

func (ExportVariantSetRequest_Format) Type() protoreflect.EnumType

type ExternalId Uses

type ExternalId struct {

    // The name of the source of this data.
    SourceName string `protobuf:"bytes,1,opt,name=source_name,json=sourceName,proto3" json:"source_name,omitempty"`
    // The id used by the source of this data.
    Id  string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
    // contains filtered or unexported fields
}

func (*ExternalId) Descriptor Uses

func (*ExternalId) Descriptor() ([]byte, []int)

Deprecated: Use ExternalId.ProtoReflect.Descriptor instead.

func (*ExternalId) GetId Uses

func (x *ExternalId) GetId() string

func (*ExternalId) GetSourceName Uses

func (x *ExternalId) GetSourceName() string

func (*ExternalId) ProtoMessage Uses

func (*ExternalId) ProtoMessage()

func (*ExternalId) ProtoReflect Uses

func (x *ExternalId) ProtoReflect() protoreflect.Message

func (*ExternalId) Reset Uses

func (x *ExternalId) Reset()

func (*ExternalId) String Uses

func (x *ExternalId) String() string

type GetAnnotationRequest Uses

type GetAnnotationRequest struct {

    // The ID of the annotation to be retrieved.
    AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
    // contains filtered or unexported fields
}

func (*GetAnnotationRequest) Descriptor Uses

func (*GetAnnotationRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetAnnotationRequest.ProtoReflect.Descriptor instead.

func (*GetAnnotationRequest) GetAnnotationId Uses

func (x *GetAnnotationRequest) GetAnnotationId() string

func (*GetAnnotationRequest) ProtoMessage Uses

func (*GetAnnotationRequest) ProtoMessage()

func (*GetAnnotationRequest) ProtoReflect Uses

func (x *GetAnnotationRequest) ProtoReflect() protoreflect.Message

func (*GetAnnotationRequest) Reset Uses

func (x *GetAnnotationRequest) Reset()

func (*GetAnnotationRequest) String Uses

func (x *GetAnnotationRequest) String() string

type GetAnnotationSetRequest Uses

type GetAnnotationSetRequest struct {

    // The ID of the annotation set to be retrieved.
    AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
    // contains filtered or unexported fields
}

func (*GetAnnotationSetRequest) Descriptor Uses

func (*GetAnnotationSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetAnnotationSetRequest.ProtoReflect.Descriptor instead.

func (*GetAnnotationSetRequest) GetAnnotationSetId Uses

func (x *GetAnnotationSetRequest) GetAnnotationSetId() string

func (*GetAnnotationSetRequest) ProtoMessage Uses

func (*GetAnnotationSetRequest) ProtoMessage()

func (*GetAnnotationSetRequest) ProtoReflect Uses

func (x *GetAnnotationSetRequest) ProtoReflect() protoreflect.Message

func (*GetAnnotationSetRequest) Reset Uses

func (x *GetAnnotationSetRequest) Reset()

func (*GetAnnotationSetRequest) String Uses

func (x *GetAnnotationSetRequest) String() string

type GetCallSetRequest Uses

type GetCallSetRequest struct {

    // The ID of the call set.
    CallSetId string `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId,proto3" json:"call_set_id,omitempty"`
    // contains filtered or unexported fields
}

func (*GetCallSetRequest) Descriptor Uses

func (*GetCallSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetCallSetRequest.ProtoReflect.Descriptor instead.

func (*GetCallSetRequest) GetCallSetId Uses

func (x *GetCallSetRequest) GetCallSetId() string

func (*GetCallSetRequest) ProtoMessage Uses

func (*GetCallSetRequest) ProtoMessage()

func (*GetCallSetRequest) ProtoReflect Uses

func (x *GetCallSetRequest) ProtoReflect() protoreflect.Message

func (*GetCallSetRequest) Reset Uses

func (x *GetCallSetRequest) Reset()

func (*GetCallSetRequest) String Uses

func (x *GetCallSetRequest) String() string

type GetDatasetRequest Uses

type GetDatasetRequest struct {

    // The ID of the dataset.
    DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    // contains filtered or unexported fields
}

func (*GetDatasetRequest) Descriptor Uses

func (*GetDatasetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetDatasetRequest.ProtoReflect.Descriptor instead.

func (*GetDatasetRequest) GetDatasetId Uses

func (x *GetDatasetRequest) GetDatasetId() string

func (*GetDatasetRequest) ProtoMessage Uses

func (*GetDatasetRequest) ProtoMessage()

func (*GetDatasetRequest) ProtoReflect Uses

func (x *GetDatasetRequest) ProtoReflect() protoreflect.Message

func (*GetDatasetRequest) Reset Uses

func (x *GetDatasetRequest) Reset()

func (*GetDatasetRequest) String Uses

func (x *GetDatasetRequest) String() string

type GetReadGroupSetRequest Uses

type GetReadGroupSetRequest struct {

    // The ID of the read group set.
    ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // contains filtered or unexported fields
}

func (*GetReadGroupSetRequest) Descriptor Uses

func (*GetReadGroupSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetReadGroupSetRequest.ProtoReflect.Descriptor instead.

func (*GetReadGroupSetRequest) GetReadGroupSetId Uses

func (x *GetReadGroupSetRequest) GetReadGroupSetId() string

func (*GetReadGroupSetRequest) ProtoMessage Uses

func (*GetReadGroupSetRequest) ProtoMessage()

func (*GetReadGroupSetRequest) ProtoReflect Uses

func (x *GetReadGroupSetRequest) ProtoReflect() protoreflect.Message

func (*GetReadGroupSetRequest) Reset Uses

func (x *GetReadGroupSetRequest) Reset()

func (*GetReadGroupSetRequest) String Uses

func (x *GetReadGroupSetRequest) String() string

type GetReferenceRequest Uses

type GetReferenceRequest struct {

    // The ID of the reference.
    ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
    // contains filtered or unexported fields
}

func (*GetReferenceRequest) Descriptor Uses

func (*GetReferenceRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetReferenceRequest.ProtoReflect.Descriptor instead.

func (*GetReferenceRequest) GetReferenceId Uses

func (x *GetReferenceRequest) GetReferenceId() string

func (*GetReferenceRequest) ProtoMessage Uses

func (*GetReferenceRequest) ProtoMessage()

func (*GetReferenceRequest) ProtoReflect Uses

func (x *GetReferenceRequest) ProtoReflect() protoreflect.Message

func (*GetReferenceRequest) Reset Uses

func (x *GetReferenceRequest) Reset()

func (*GetReferenceRequest) String Uses

func (x *GetReferenceRequest) String() string

type GetReferenceSetRequest Uses

type GetReferenceSetRequest struct {

    // The ID of the reference set.
    ReferenceSetId string `protobuf:"bytes,1,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    // contains filtered or unexported fields
}

func (*GetReferenceSetRequest) Descriptor Uses

func (*GetReferenceSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetReferenceSetRequest.ProtoReflect.Descriptor instead.

func (*GetReferenceSetRequest) GetReferenceSetId Uses

func (x *GetReferenceSetRequest) GetReferenceSetId() string

func (*GetReferenceSetRequest) ProtoMessage Uses

func (*GetReferenceSetRequest) ProtoMessage()

func (*GetReferenceSetRequest) ProtoReflect Uses

func (x *GetReferenceSetRequest) ProtoReflect() protoreflect.Message

func (*GetReferenceSetRequest) Reset Uses

func (x *GetReferenceSetRequest) Reset()

func (*GetReferenceSetRequest) String Uses

func (x *GetReferenceSetRequest) String() string

type GetVariantRequest Uses

type GetVariantRequest struct {

    // The ID of the variant.
    VariantId string `protobuf:"bytes,1,opt,name=variant_id,json=variantId,proto3" json:"variant_id,omitempty"`
    // contains filtered or unexported fields
}

func (*GetVariantRequest) Descriptor Uses

func (*GetVariantRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetVariantRequest.ProtoReflect.Descriptor instead.

func (*GetVariantRequest) GetVariantId Uses

func (x *GetVariantRequest) GetVariantId() string

func (*GetVariantRequest) ProtoMessage Uses

func (*GetVariantRequest) ProtoMessage()

func (*GetVariantRequest) ProtoReflect Uses

func (x *GetVariantRequest) ProtoReflect() protoreflect.Message

func (*GetVariantRequest) Reset Uses

func (x *GetVariantRequest) Reset()

func (*GetVariantRequest) String Uses

func (x *GetVariantRequest) String() string

type GetVariantSetRequest Uses

type GetVariantSetRequest struct {

    // Required. The ID of the variant set.
    VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
    // contains filtered or unexported fields
}

The variant set request.

func (*GetVariantSetRequest) Descriptor Uses

func (*GetVariantSetRequest) Descriptor() ([]byte, []int)

Deprecated: Use GetVariantSetRequest.ProtoReflect.Descriptor instead.

func (*GetVariantSetRequest) GetVariantSetId Uses

func (x *GetVariantSetRequest) GetVariantSetId() string

func (*GetVariantSetRequest) ProtoMessage Uses

func (*GetVariantSetRequest) ProtoMessage()

func (*GetVariantSetRequest) ProtoReflect Uses

func (x *GetVariantSetRequest) ProtoReflect() protoreflect.Message

func (*GetVariantSetRequest) Reset Uses

func (x *GetVariantSetRequest) Reset()

func (*GetVariantSetRequest) String Uses

func (x *GetVariantSetRequest) String() string

type ImportReadGroupSetsRequest Uses

type ImportReadGroupSetsRequest struct {

    // Required. The ID of the dataset these read group sets will belong to. The
    // caller must have WRITE permissions to this dataset.
    DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    // The reference set to which the imported read group sets are aligned to, if
    // any. The reference names of this reference set must be a superset of those
    // found in the imported file headers. If no reference set id is provided, a
    // best effort is made to associate with a matching reference set.
    ReferenceSetId string `protobuf:"bytes,4,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    // A list of URIs pointing at [BAM
    // files](https://samtools.github.io/hts-specs/SAMv1.pdf)
    // in Google Cloud Storage.
    // Those URIs can include wildcards (*), but do not add or remove
    // matching files before import has completed.
    //
    // Note that Google Cloud Storage object listing is only eventually
    // consistent: files added may be not be immediately visible to
    // everyone. Thus, if using a wildcard it is preferable not to start
    // the import immediately after the files are created.
    SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"`
    // The partition strategy describes how read groups are partitioned into read
    // group sets.
    PartitionStrategy ImportReadGroupSetsRequest_PartitionStrategy `protobuf:"varint,5,opt,name=partition_strategy,json=partitionStrategy,proto3,enum=google.genomics.v1.ImportReadGroupSetsRequest_PartitionStrategy" json:"partition_strategy,omitempty"`
    // contains filtered or unexported fields
}

The read group set import request.

func (*ImportReadGroupSetsRequest) Descriptor Uses

func (*ImportReadGroupSetsRequest) Descriptor() ([]byte, []int)

Deprecated: Use ImportReadGroupSetsRequest.ProtoReflect.Descriptor instead.

func (*ImportReadGroupSetsRequest) GetDatasetId Uses

func (x *ImportReadGroupSetsRequest) GetDatasetId() string

func (*ImportReadGroupSetsRequest) GetPartitionStrategy Uses

func (x *ImportReadGroupSetsRequest) GetPartitionStrategy() ImportReadGroupSetsRequest_PartitionStrategy

func (*ImportReadGroupSetsRequest) GetReferenceSetId Uses

func (x *ImportReadGroupSetsRequest) GetReferenceSetId() string

func (*ImportReadGroupSetsRequest) GetSourceUris Uses

func (x *ImportReadGroupSetsRequest) GetSourceUris() []string

func (*ImportReadGroupSetsRequest) ProtoMessage Uses

func (*ImportReadGroupSetsRequest) ProtoMessage()

func (*ImportReadGroupSetsRequest) ProtoReflect Uses

func (x *ImportReadGroupSetsRequest) ProtoReflect() protoreflect.Message

func (*ImportReadGroupSetsRequest) Reset Uses

func (x *ImportReadGroupSetsRequest) Reset()

func (*ImportReadGroupSetsRequest) String Uses

func (x *ImportReadGroupSetsRequest) String() string

type ImportReadGroupSetsRequest_PartitionStrategy Uses

type ImportReadGroupSetsRequest_PartitionStrategy int32
const (
    ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED ImportReadGroupSetsRequest_PartitionStrategy = 0
    // In most cases, this strategy yields one read group set per file. This is
    // the default behavior.
    //
    // Allocate one read group set per file per sample. For BAM files, read
    // groups are considered to share a sample if they have identical sample
    // names. Furthermore, all reads for each file which do not belong to a read
    // group, if any, will be grouped into a single read group set per-file.
    ImportReadGroupSetsRequest_PER_FILE_PER_SAMPLE ImportReadGroupSetsRequest_PartitionStrategy = 1
    // Includes all read groups in all imported files into a single read group
    // set. Requires that the headers for all imported files are equivalent. All
    // reads which do not belong to a read group, if any, will be grouped into a
    // separate read group set.
    ImportReadGroupSetsRequest_MERGE_ALL ImportReadGroupSetsRequest_PartitionStrategy = 2
)

func (ImportReadGroupSetsRequest_PartitionStrategy) Descriptor Uses

func (ImportReadGroupSetsRequest_PartitionStrategy) Descriptor() protoreflect.EnumDescriptor

func (ImportReadGroupSetsRequest_PartitionStrategy) Enum Uses

func (x ImportReadGroupSetsRequest_PartitionStrategy) Enum() *ImportReadGroupSetsRequest_PartitionStrategy

func (ImportReadGroupSetsRequest_PartitionStrategy) EnumDescriptor Uses

func (ImportReadGroupSetsRequest_PartitionStrategy) EnumDescriptor() ([]byte, []int)

Deprecated: Use ImportReadGroupSetsRequest_PartitionStrategy.Descriptor instead.

func (ImportReadGroupSetsRequest_PartitionStrategy) Number Uses

func (x ImportReadGroupSetsRequest_PartitionStrategy) Number() protoreflect.EnumNumber

func (ImportReadGroupSetsRequest_PartitionStrategy) String Uses

func (x ImportReadGroupSetsRequest_PartitionStrategy) String() string

func (ImportReadGroupSetsRequest_PartitionStrategy) Type Uses

func (ImportReadGroupSetsRequest_PartitionStrategy) Type() protoreflect.EnumType

type ImportReadGroupSetsResponse Uses

type ImportReadGroupSetsResponse struct {

    // IDs of the read group sets that were created.
    ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"`
    // contains filtered or unexported fields
}

The read group set import response.

func (*ImportReadGroupSetsResponse) Descriptor Uses

func (*ImportReadGroupSetsResponse) Descriptor() ([]byte, []int)

Deprecated: Use ImportReadGroupSetsResponse.ProtoReflect.Descriptor instead.

func (*ImportReadGroupSetsResponse) GetReadGroupSetIds Uses

func (x *ImportReadGroupSetsResponse) GetReadGroupSetIds() []string

func (*ImportReadGroupSetsResponse) ProtoMessage Uses

func (*ImportReadGroupSetsResponse) ProtoMessage()

func (*ImportReadGroupSetsResponse) ProtoReflect Uses

func (x *ImportReadGroupSetsResponse) ProtoReflect() protoreflect.Message

func (*ImportReadGroupSetsResponse) Reset Uses

func (x *ImportReadGroupSetsResponse) Reset()

func (*ImportReadGroupSetsResponse) String Uses

func (x *ImportReadGroupSetsResponse) String() string

type ImportVariantsRequest Uses

type ImportVariantsRequest struct {

    // Required. The variant set to which variant data should be imported.
    VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
    // A list of URIs referencing variant files in Google Cloud Storage. URIs can
    // include wildcards [as described
    // here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
    // Note that recursive wildcards ('**') are not supported.
    SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"`
    // The format of the variant data being imported. If unspecified, defaults to
    // to `VCF`.
    Format ImportVariantsRequest_Format `protobuf:"varint,3,opt,name=format,proto3,enum=google.genomics.v1.ImportVariantsRequest_Format" json:"format,omitempty"`
    // Convert reference names to the canonical representation.
    // hg19 haploytypes (those reference names containing "_hap")
    // are not modified in any way.
    // All other reference names are modified according to the following rules:
    // The reference name is capitalized.
    // The "chr" prefix is dropped for all autosomes and sex chromsomes.
    // For example "chr17" becomes "17" and "chrX" becomes "X".
    // All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
    NormalizeReferenceNames bool `protobuf:"varint,5,opt,name=normalize_reference_names,json=normalizeReferenceNames,proto3" json:"normalize_reference_names,omitempty"`
    // A mapping between info field keys and the InfoMergeOperations to
    // be performed on them. This is plumbed down to the MergeVariantRequests
    // generated by the resulting import job.
    InfoMergeConfig map[string]InfoMergeOperation `protobuf:"bytes,6,rep,name=info_merge_config,json=infoMergeConfig,proto3" json:"info_merge_config,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"varint,2,opt,name=value,proto3,enum=google.genomics.v1.InfoMergeOperation"`
    // contains filtered or unexported fields
}

The variant data import request.

func (*ImportVariantsRequest) Descriptor Uses

func (*ImportVariantsRequest) Descriptor() ([]byte, []int)

Deprecated: Use ImportVariantsRequest.ProtoReflect.Descriptor instead.

func (*ImportVariantsRequest) GetFormat Uses

func (x *ImportVariantsRequest) GetFormat() ImportVariantsRequest_Format

func (*ImportVariantsRequest) GetInfoMergeConfig Uses

func (x *ImportVariantsRequest) GetInfoMergeConfig() map[string]InfoMergeOperation

func (*ImportVariantsRequest) GetNormalizeReferenceNames Uses

func (x *ImportVariantsRequest) GetNormalizeReferenceNames() bool

func (*ImportVariantsRequest) GetSourceUris Uses

func (x *ImportVariantsRequest) GetSourceUris() []string

func (*ImportVariantsRequest) GetVariantSetId Uses

func (x *ImportVariantsRequest) GetVariantSetId() string

func (*ImportVariantsRequest) ProtoMessage Uses

func (*ImportVariantsRequest) ProtoMessage()

func (*ImportVariantsRequest) ProtoReflect Uses

func (x *ImportVariantsRequest) ProtoReflect() protoreflect.Message

func (*ImportVariantsRequest) Reset Uses

func (x *ImportVariantsRequest) Reset()

func (*ImportVariantsRequest) String Uses

func (x *ImportVariantsRequest) String() string

type ImportVariantsRequest_Format Uses

type ImportVariantsRequest_Format int32
const (
    ImportVariantsRequest_FORMAT_UNSPECIFIED ImportVariantsRequest_Format = 0
    // VCF (Variant Call Format). The VCF files may be gzip compressed. gVCF is
    // also supported.
    ImportVariantsRequest_FORMAT_VCF ImportVariantsRequest_Format = 1
    // Complete Genomics masterVarBeta format. The masterVarBeta files may
    // be bzip2 compressed.
    ImportVariantsRequest_FORMAT_COMPLETE_GENOMICS ImportVariantsRequest_Format = 2
)

func (ImportVariantsRequest_Format) Descriptor Uses

func (ImportVariantsRequest_Format) Descriptor() protoreflect.EnumDescriptor

func (ImportVariantsRequest_Format) Enum Uses

func (x ImportVariantsRequest_Format) Enum() *ImportVariantsRequest_Format

func (ImportVariantsRequest_Format) EnumDescriptor Uses

func (ImportVariantsRequest_Format) EnumDescriptor() ([]byte, []int)

Deprecated: Use ImportVariantsRequest_Format.Descriptor instead.

func (ImportVariantsRequest_Format) Number Uses

func (x ImportVariantsRequest_Format) Number() protoreflect.EnumNumber

func (ImportVariantsRequest_Format) String Uses

func (x ImportVariantsRequest_Format) String() string

func (ImportVariantsRequest_Format) Type Uses

func (ImportVariantsRequest_Format) Type() protoreflect.EnumType

type ImportVariantsResponse Uses

type ImportVariantsResponse struct {

    // IDs of the call sets created during the import.
    CallSetIds []string `protobuf:"bytes,1,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
    // contains filtered or unexported fields
}

The variant data import response.

func (*ImportVariantsResponse) Descriptor Uses

func (*ImportVariantsResponse) Descriptor() ([]byte, []int)

Deprecated: Use ImportVariantsResponse.ProtoReflect.Descriptor instead.

func (*ImportVariantsResponse) GetCallSetIds Uses

func (x *ImportVariantsResponse) GetCallSetIds() []string

func (*ImportVariantsResponse) ProtoMessage Uses

func (*ImportVariantsResponse) ProtoMessage()

func (*ImportVariantsResponse) ProtoReflect Uses

func (x *ImportVariantsResponse) ProtoReflect() protoreflect.Message

func (*ImportVariantsResponse) Reset Uses

func (x *ImportVariantsResponse) Reset()

func (*ImportVariantsResponse) String Uses

func (x *ImportVariantsResponse) String() string

type InfoMergeOperation Uses

type InfoMergeOperation int32

Operations to be performed during import on Variant info fields. These operations are set for each info field in the info_merge_config map of ImportVariantsRequest, which is plumbed down to the MergeVariantRequests generated by the import job.

const (
    InfoMergeOperation_INFO_MERGE_OPERATION_UNSPECIFIED InfoMergeOperation = 0
    // By default, Variant info fields are persisted if the Variant doesn't
    // already exist in the variantset.  If the Variant is equivalent to a
    // Variant already in the variantset, the incoming Variant's info field
    // is ignored in favor of that of the already persisted Variant.
    InfoMergeOperation_IGNORE_NEW InfoMergeOperation = 1
    // This operation removes an info field from the incoming Variant
    // and persists this info field in each of the incoming Variant's Calls.
    InfoMergeOperation_MOVE_TO_CALLS InfoMergeOperation = 2
)

func (InfoMergeOperation) Descriptor Uses

func (InfoMergeOperation) Descriptor() protoreflect.EnumDescriptor

func (InfoMergeOperation) Enum Uses

func (x InfoMergeOperation) Enum() *InfoMergeOperation

func (InfoMergeOperation) EnumDescriptor Uses

func (InfoMergeOperation) EnumDescriptor() ([]byte, []int)

Deprecated: Use InfoMergeOperation.Descriptor instead.

func (InfoMergeOperation) Number Uses

func (x InfoMergeOperation) Number() protoreflect.EnumNumber

func (InfoMergeOperation) String Uses

func (x InfoMergeOperation) String() string

func (InfoMergeOperation) Type Uses

func (InfoMergeOperation) Type() protoreflect.EnumType

type LinearAlignment Uses

type LinearAlignment struct {

    // The position of this alignment.
    Position *Position `protobuf:"bytes,1,opt,name=position,proto3" json:"position,omitempty"`
    // The mapping quality of this alignment. Represents how likely
    // the read maps to this position as opposed to other locations.
    //
    // Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
    // the nearest integer.
    MappingQuality int32 `protobuf:"varint,2,opt,name=mapping_quality,json=mappingQuality,proto3" json:"mapping_quality,omitempty"`
    // Represents the local alignment of this sequence (alignment matches, indels,
    // etc) against the reference.
    Cigar []*CigarUnit `protobuf:"bytes,3,rep,name=cigar,proto3" json:"cigar,omitempty"`
    // contains filtered or unexported fields
}

A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

func (*LinearAlignment) Descriptor Uses

func (*LinearAlignment) Descriptor() ([]byte, []int)

Deprecated: Use LinearAlignment.ProtoReflect.Descriptor instead.

func (*LinearAlignment) GetCigar Uses

func (x *LinearAlignment) GetCigar() []*CigarUnit

func (*LinearAlignment) GetMappingQuality Uses

func (x *LinearAlignment) GetMappingQuality() int32

func (*LinearAlignment) GetPosition Uses

func (x *LinearAlignment) GetPosition() *Position

func (*LinearAlignment) ProtoMessage Uses

func (*LinearAlignment) ProtoMessage()

func (*LinearAlignment) ProtoReflect Uses

func (x *LinearAlignment) ProtoReflect() protoreflect.Message

func (*LinearAlignment) Reset Uses

func (x *LinearAlignment) Reset()

func (*LinearAlignment) String Uses

func (x *LinearAlignment) String() string

type ListBasesRequest Uses

type ListBasesRequest struct {

    // The ID of the reference.
    ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
    // The start position (0-based) of this query. Defaults to 0.
    Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
    // The end position (0-based, exclusive) of this query. Defaults to the length
    // of this reference.
    End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of bases to return in a single page. If unspecified,
    // defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
    // pairs).
    PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

func (*ListBasesRequest) Descriptor Uses

func (*ListBasesRequest) Descriptor() ([]byte, []int)

Deprecated: Use ListBasesRequest.ProtoReflect.Descriptor instead.

func (*ListBasesRequest) GetEnd Uses

func (x *ListBasesRequest) GetEnd() int64

func (*ListBasesRequest) GetPageSize Uses

func (x *ListBasesRequest) GetPageSize() int32

func (*ListBasesRequest) GetPageToken Uses

func (x *ListBasesRequest) GetPageToken() string

func (*ListBasesRequest) GetReferenceId Uses

func (x *ListBasesRequest) GetReferenceId() string

func (*ListBasesRequest) GetStart Uses

func (x *ListBasesRequest) GetStart() int64

func (*ListBasesRequest) ProtoMessage Uses

func (*ListBasesRequest) ProtoMessage()

func (*ListBasesRequest) ProtoReflect Uses

func (x *ListBasesRequest) ProtoReflect() protoreflect.Message

func (*ListBasesRequest) Reset Uses

func (x *ListBasesRequest) Reset()

func (*ListBasesRequest) String Uses

func (x *ListBasesRequest) String() string

type ListBasesResponse Uses

type ListBasesResponse struct {

    // The offset position (0-based) of the given `sequence` from the
    // start of this `Reference`. This value will differ for each page
    // in a paginated request.
    Offset int64 `protobuf:"varint,1,opt,name=offset,proto3" json:"offset,omitempty"`
    // A substring of the bases that make up this reference.
    Sequence string `protobuf:"bytes,2,opt,name=sequence,proto3" json:"sequence,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

func (*ListBasesResponse) Descriptor Uses

func (*ListBasesResponse) Descriptor() ([]byte, []int)

Deprecated: Use ListBasesResponse.ProtoReflect.Descriptor instead.

func (*ListBasesResponse) GetNextPageToken Uses

func (x *ListBasesResponse) GetNextPageToken() string

func (*ListBasesResponse) GetOffset Uses

func (x *ListBasesResponse) GetOffset() int64

func (*ListBasesResponse) GetSequence Uses

func (x *ListBasesResponse) GetSequence() string

func (*ListBasesResponse) ProtoMessage Uses

func (*ListBasesResponse) ProtoMessage()

func (*ListBasesResponse) ProtoReflect Uses

func (x *ListBasesResponse) ProtoReflect() protoreflect.Message

func (*ListBasesResponse) Reset Uses

func (x *ListBasesResponse) Reset()

func (*ListBasesResponse) String Uses

func (x *ListBasesResponse) String() string

type ListCoverageBucketsRequest Uses

type ListCoverageBucketsRequest struct {

    // Required. The ID of the read group set over which coverage is requested.
    ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // The name of the reference to query, within the reference set associated
    // with this query. Optional.
    ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The start position of the range on the reference, 0-based inclusive. If
    // specified, `referenceName` must also be specified. Defaults to 0.
    Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
    // The end position of the range on the reference, 0-based exclusive. If
    // specified, `referenceName` must also be specified. If unset or 0, defaults
    // to the length of the reference.
    End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
    // The desired width of each reported coverage bucket in base pairs. This
    // will be rounded down to the nearest precomputed bucket width; the value
    // of which is returned as `bucketWidth` in the response. Defaults
    // to infinity (each bucket spans an entire reference sequence) or the length
    // of the target range, if specified. The smallest precomputed
    // `bucketWidth` is currently 2048 base pairs; this is subject to
    // change.
    TargetBucketWidth int64 `protobuf:"varint,6,opt,name=target_bucket_width,json=targetBucketWidth,proto3" json:"target_bucket_width,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 1024. The maximum value is 2048.
    PageSize int32 `protobuf:"varint,8,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

func (*ListCoverageBucketsRequest) Descriptor Uses

func (*ListCoverageBucketsRequest) Descriptor() ([]byte, []int)

Deprecated: Use ListCoverageBucketsRequest.ProtoReflect.Descriptor instead.

func (*ListCoverageBucketsRequest) GetEnd Uses

func (x *ListCoverageBucketsRequest) GetEnd() int64

func (*ListCoverageBucketsRequest) GetPageSize Uses

func (x *ListCoverageBucketsRequest) GetPageSize() int32

func (*ListCoverageBucketsRequest) GetPageToken Uses

func (x *ListCoverageBucketsRequest) GetPageToken() string

func (*ListCoverageBucketsRequest) GetReadGroupSetId Uses

func (x *ListCoverageBucketsRequest) GetReadGroupSetId() string

func (*ListCoverageBucketsRequest) GetReferenceName Uses

func (x *ListCoverageBucketsRequest) GetReferenceName() string

func (*ListCoverageBucketsRequest) GetStart Uses

func (x *ListCoverageBucketsRequest) GetStart() int64

func (*ListCoverageBucketsRequest) GetTargetBucketWidth Uses

func (x *ListCoverageBucketsRequest) GetTargetBucketWidth() int64

func (*ListCoverageBucketsRequest) ProtoMessage Uses

func (*ListCoverageBucketsRequest) ProtoMessage()

func (*ListCoverageBucketsRequest) ProtoReflect Uses

func (x *ListCoverageBucketsRequest) ProtoReflect() protoreflect.Message

func (*ListCoverageBucketsRequest) Reset Uses

func (x *ListCoverageBucketsRequest) Reset()

func (*ListCoverageBucketsRequest) String Uses

func (x *ListCoverageBucketsRequest) String() string

type ListCoverageBucketsResponse Uses

type ListCoverageBucketsResponse struct {

    // The length of each coverage bucket in base pairs. Note that buckets at the
    // end of a reference sequence may be shorter. This value is omitted if the
    // bucket width is infinity (the default behaviour, with no range or
    // `targetBucketWidth`).
    BucketWidth int64 `protobuf:"varint,1,opt,name=bucket_width,json=bucketWidth,proto3" json:"bucket_width,omitempty"`
    // The coverage buckets. The list of buckets is sparse; a bucket with 0
    // overlapping reads is not returned. A bucket never crosses more than one
    // reference sequence. Each bucket has width `bucketWidth`, unless
    // its end is the end of the reference sequence.
    CoverageBuckets []*CoverageBucket `protobuf:"bytes,2,rep,name=coverage_buckets,json=coverageBuckets,proto3" json:"coverage_buckets,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

func (*ListCoverageBucketsResponse) Descriptor Uses

func (*ListCoverageBucketsResponse) Descriptor() ([]byte, []int)

Deprecated: Use ListCoverageBucketsResponse.ProtoReflect.Descriptor instead.

func (*ListCoverageBucketsResponse) GetBucketWidth Uses

func (x *ListCoverageBucketsResponse) GetBucketWidth() int64

func (*ListCoverageBucketsResponse) GetCoverageBuckets Uses

func (x *ListCoverageBucketsResponse) GetCoverageBuckets() []*CoverageBucket

func (*ListCoverageBucketsResponse) GetNextPageToken Uses

func (x *ListCoverageBucketsResponse) GetNextPageToken() string

func (*ListCoverageBucketsResponse) ProtoMessage Uses

func (*ListCoverageBucketsResponse) ProtoMessage()

func (*ListCoverageBucketsResponse) ProtoReflect Uses

func (x *ListCoverageBucketsResponse) ProtoReflect() protoreflect.Message

func (*ListCoverageBucketsResponse) Reset Uses

func (x *ListCoverageBucketsResponse) Reset()

func (*ListCoverageBucketsResponse) String Uses

func (x *ListCoverageBucketsResponse) String() string

type ListDatasetsRequest Uses

type ListDatasetsRequest struct {

    // Required. The Google Cloud project ID to list datasets for.
    ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 50. The maximum value is 1024.
    PageSize int32 `protobuf:"varint,2,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // contains filtered or unexported fields
}

The dataset list request.

func (*ListDatasetsRequest) Descriptor Uses

func (*ListDatasetsRequest) Descriptor() ([]byte, []int)

Deprecated: Use ListDatasetsRequest.ProtoReflect.Descriptor instead.

func (*ListDatasetsRequest) GetPageSize Uses

func (x *ListDatasetsRequest) GetPageSize() int32

func (*ListDatasetsRequest) GetPageToken Uses

func (x *ListDatasetsRequest) GetPageToken() string

func (*ListDatasetsRequest) GetProjectId Uses

func (x *ListDatasetsRequest) GetProjectId() string

func (*ListDatasetsRequest) ProtoMessage Uses

func (*ListDatasetsRequest) ProtoMessage()

func (*ListDatasetsRequest) ProtoReflect Uses

func (x *ListDatasetsRequest) ProtoReflect() protoreflect.Message

func (*ListDatasetsRequest) Reset Uses

func (x *ListDatasetsRequest) Reset()

func (*ListDatasetsRequest) String Uses

func (x *ListDatasetsRequest) String() string

type ListDatasetsResponse Uses

type ListDatasetsResponse struct {

    // The list of matching Datasets.
    Datasets []*Dataset `protobuf:"bytes,1,rep,name=datasets,proto3" json:"datasets,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

The dataset list response.

func (*ListDatasetsResponse) Descriptor Uses

func (*ListDatasetsResponse) Descriptor() ([]byte, []int)

Deprecated: Use ListDatasetsResponse.ProtoReflect.Descriptor instead.

func (*ListDatasetsResponse) GetDatasets Uses

func (x *ListDatasetsResponse) GetDatasets() []*Dataset

func (*ListDatasetsResponse) GetNextPageToken Uses

func (x *ListDatasetsResponse) GetNextPageToken() string

func (*ListDatasetsResponse) ProtoMessage Uses

func (*ListDatasetsResponse) ProtoMessage()

func (*ListDatasetsResponse) ProtoReflect Uses

func (x *ListDatasetsResponse) ProtoReflect() protoreflect.Message

func (*ListDatasetsResponse) Reset Uses

func (x *ListDatasetsResponse) Reset()

func (*ListDatasetsResponse) String Uses

func (x *ListDatasetsResponse) String() string

type MergeVariantsRequest Uses

type MergeVariantsRequest struct {

    // The destination variant set.
    VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
    // The variants to be merged with existing variants.
    Variants []*Variant `protobuf:"bytes,2,rep,name=variants,proto3" json:"variants,omitempty"`
    // A mapping between info field keys and the InfoMergeOperations to
    // be performed on them.
    InfoMergeConfig map[string]InfoMergeOperation `protobuf:"bytes,3,rep,name=info_merge_config,json=infoMergeConfig,proto3" json:"info_merge_config,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"varint,2,opt,name=value,proto3,enum=google.genomics.v1.InfoMergeOperation"`
    // contains filtered or unexported fields
}

func (*MergeVariantsRequest) Descriptor Uses

func (*MergeVariantsRequest) Descriptor() ([]byte, []int)

Deprecated: Use MergeVariantsRequest.ProtoReflect.Descriptor instead.

func (*MergeVariantsRequest) GetInfoMergeConfig Uses

func (x *MergeVariantsRequest) GetInfoMergeConfig() map[string]InfoMergeOperation

func (*MergeVariantsRequest) GetVariantSetId Uses

func (x *MergeVariantsRequest) GetVariantSetId() string

func (*MergeVariantsRequest) GetVariants Uses

func (x *MergeVariantsRequest) GetVariants() []*Variant

func (*MergeVariantsRequest) ProtoMessage Uses

func (*MergeVariantsRequest) ProtoMessage()

func (*MergeVariantsRequest) ProtoReflect Uses

func (x *MergeVariantsRequest) ProtoReflect() protoreflect.Message

func (*MergeVariantsRequest) Reset Uses

func (x *MergeVariantsRequest) Reset()

func (*MergeVariantsRequest) String Uses

func (x *MergeVariantsRequest) String() string

type OperationEvent Uses

type OperationEvent struct {

    // Optional time of when event started.
    StartTime *timestamp.Timestamp `protobuf:"bytes,1,opt,name=start_time,json=startTime,proto3" json:"start_time,omitempty"`
    // Optional time of when event finished. An event can have a start time and no
    // finish time. If an event has a finish time, there must be a start time.
    EndTime *timestamp.Timestamp `protobuf:"bytes,2,opt,name=end_time,json=endTime,proto3" json:"end_time,omitempty"`
    // Required description of event.
    Description string `protobuf:"bytes,3,opt,name=description,proto3" json:"description,omitempty"`
    // contains filtered or unexported fields
}

An event that occurred during an [Operation][google.longrunning.Operation].

func (*OperationEvent) Descriptor Uses

func (*OperationEvent) Descriptor() ([]byte, []int)

Deprecated: Use OperationEvent.ProtoReflect.Descriptor instead.

func (*OperationEvent) GetDescription Uses

func (x *OperationEvent) GetDescription() string

func (*OperationEvent) GetEndTime Uses

func (x *OperationEvent) GetEndTime() *timestamp.Timestamp

func (*OperationEvent) GetStartTime Uses

func (x *OperationEvent) GetStartTime() *timestamp.Timestamp

func (*OperationEvent) ProtoMessage Uses

func (*OperationEvent) ProtoMessage()

func (*OperationEvent) ProtoReflect Uses

func (x *OperationEvent) ProtoReflect() protoreflect.Message

func (*OperationEvent) Reset Uses

func (x *OperationEvent) Reset()

func (*OperationEvent) String Uses

func (x *OperationEvent) String() string

type OperationMetadata Uses

type OperationMetadata struct {

    // The Google Cloud Project in which the job is scoped.
    ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // The time at which the job was submitted to the Genomics service.
    CreateTime *timestamp.Timestamp `protobuf:"bytes,2,opt,name=create_time,json=createTime,proto3" json:"create_time,omitempty"`
    // The time at which the job began to run.
    StartTime *timestamp.Timestamp `protobuf:"bytes,3,opt,name=start_time,json=startTime,proto3" json:"start_time,omitempty"`
    // The time at which the job stopped running.
    EndTime *timestamp.Timestamp `protobuf:"bytes,4,opt,name=end_time,json=endTime,proto3" json:"end_time,omitempty"`
    // The original request that started the operation. Note that this will be in
    // current version of the API. If the operation was started with v1beta2 API
    // and a GetOperation is performed on v1 API, a v1 request will be returned.
    Request *any.Any `protobuf:"bytes,5,opt,name=request,proto3" json:"request,omitempty"`
    // Optional event messages that were generated during the job's execution.
    // This also contains any warnings that were generated during import
    // or export.
    Events []*OperationEvent `protobuf:"bytes,6,rep,name=events,proto3" json:"events,omitempty"`
    // This field is deprecated. Use `labels` instead. Optionally provided by the
    // caller when submitting the request that creates the operation.
    ClientId string `protobuf:"bytes,7,opt,name=client_id,json=clientId,proto3" json:"client_id,omitempty"`
    // Runtime metadata on this Operation.
    RuntimeMetadata *any.Any `protobuf:"bytes,8,opt,name=runtime_metadata,json=runtimeMetadata,proto3" json:"runtime_metadata,omitempty"`
    // Optionally provided by the caller when submitting the request that creates
    // the operation.
    Labels map[string]string `protobuf:"bytes,9,rep,name=labels,proto3" json:"labels,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

Metadata describing an [Operation][google.longrunning.Operation].

func (*OperationMetadata) Descriptor Uses

func (*OperationMetadata) Descriptor() ([]byte, []int)

Deprecated: Use OperationMetadata.ProtoReflect.Descriptor instead.

func (*OperationMetadata) GetClientId Uses

func (x *OperationMetadata) GetClientId() string

func (*OperationMetadata) GetCreateTime Uses

func (x *OperationMetadata) GetCreateTime() *timestamp.Timestamp

func (*OperationMetadata) GetEndTime Uses

func (x *OperationMetadata) GetEndTime() *timestamp.Timestamp

func (*OperationMetadata) GetEvents Uses

func (x *OperationMetadata) GetEvents() []*OperationEvent

func (*OperationMetadata) GetLabels Uses

func (x *OperationMetadata) GetLabels() map[string]string

func (*OperationMetadata) GetProjectId Uses

func (x *OperationMetadata) GetProjectId() string

func (*OperationMetadata) GetRequest Uses

func (x *OperationMetadata) GetRequest() *any.Any

func (*OperationMetadata) GetRuntimeMetadata Uses

func (x *OperationMetadata) GetRuntimeMetadata() *any.Any

func (*OperationMetadata) GetStartTime Uses

func (x *OperationMetadata) GetStartTime() *timestamp.Timestamp

func (*OperationMetadata) ProtoMessage Uses

func (*OperationMetadata) ProtoMessage()

func (*OperationMetadata) ProtoReflect Uses

func (x *OperationMetadata) ProtoReflect() protoreflect.Message

func (*OperationMetadata) Reset Uses

func (x *OperationMetadata) Reset()

func (*OperationMetadata) String Uses

func (x *OperationMetadata) String() string

type Position Uses

type Position struct {

    // The name of the reference in whatever reference set is being used.
    ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The 0-based offset from the start of the forward strand for that reference.
    Position int64 `protobuf:"varint,2,opt,name=position,proto3" json:"position,omitempty"`
    // Whether this position is on the reverse strand, as opposed to the forward
    // strand.
    ReverseStrand bool `protobuf:"varint,3,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
    // contains filtered or unexported fields
}

An abstraction for referring to a genomic position, in relation to some already known reference. For now, represents a genomic position as a reference name, a base number on that reference (0-based), and a determination of forward or reverse strand.

func (*Position) Descriptor Uses

func (*Position) Descriptor() ([]byte, []int)

Deprecated: Use Position.ProtoReflect.Descriptor instead.

func (*Position) GetPosition Uses

func (x *Position) GetPosition() int64

func (*Position) GetReferenceName Uses

func (x *Position) GetReferenceName() string

func (*Position) GetReverseStrand Uses

func (x *Position) GetReverseStrand() bool

func (*Position) ProtoMessage Uses

func (*Position) ProtoMessage()

func (*Position) ProtoReflect Uses

func (x *Position) ProtoReflect() protoreflect.Message

func (*Position) Reset Uses

func (x *Position) Reset()

func (*Position) String Uses

func (x *Position) String() string

type Range Uses

type Range struct {

    // The reference sequence name, for example `chr1`,
    // `1`, or `chrX`.
    ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The start position of the range on the reference, 0-based inclusive.
    Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
    // The end position of the range on the reference, 0-based exclusive.
    End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
    // contains filtered or unexported fields
}

A 0-based half-open genomic coordinate range for search requests.

func (*Range) Descriptor Uses

func (*Range) Descriptor() ([]byte, []int)

Deprecated: Use Range.ProtoReflect.Descriptor instead.

func (*Range) GetEnd Uses

func (x *Range) GetEnd() int64

func (*Range) GetReferenceName Uses

func (x *Range) GetReferenceName() string

func (*Range) GetStart Uses

func (x *Range) GetStart() int64

func (*Range) ProtoMessage Uses

func (*Range) ProtoMessage()

func (*Range) ProtoReflect Uses

func (x *Range) ProtoReflect() protoreflect.Message

func (*Range) Reset Uses

func (x *Range) Reset()

func (*Range) String Uses

func (x *Range) String() string

type Read Uses

type Read struct {

    // The server-generated read ID, unique across all reads. This is different
    // from the `fragmentName`.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The ID of the read group this read belongs to. A read belongs to exactly
    // one read group. This is a server-generated ID which is distinct from SAM's
    // RG tag (for that value, see
    // [ReadGroup.name][google.genomics.v1.ReadGroup.name]).
    ReadGroupId string `protobuf:"bytes,2,opt,name=read_group_id,json=readGroupId,proto3" json:"read_group_id,omitempty"`
    // The ID of the read group set this read belongs to. A read belongs to
    // exactly one read group set.
    ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // The fragment name. Equivalent to QNAME (query template name) in SAM.
    FragmentName string `protobuf:"bytes,4,opt,name=fragment_name,json=fragmentName,proto3" json:"fragment_name,omitempty"`
    // The orientation and the distance between reads from the fragment are
    // consistent with the sequencing protocol (SAM flag 0x2).
    ProperPlacement bool `protobuf:"varint,5,opt,name=proper_placement,json=properPlacement,proto3" json:"proper_placement,omitempty"`
    // The fragment is a PCR or optical duplicate (SAM flag 0x400).
    DuplicateFragment bool `protobuf:"varint,6,opt,name=duplicate_fragment,json=duplicateFragment,proto3" json:"duplicate_fragment,omitempty"`
    // The observed length of the fragment, equivalent to TLEN in SAM.
    FragmentLength int32 `protobuf:"varint,7,opt,name=fragment_length,json=fragmentLength,proto3" json:"fragment_length,omitempty"`
    // The read number in sequencing. 0-based and less than numberReads. This
    // field replaces SAM flag 0x40 and 0x80.
    ReadNumber int32 `protobuf:"varint,8,opt,name=read_number,json=readNumber,proto3" json:"read_number,omitempty"`
    // The number of reads in the fragment (extension to SAM flag 0x1).
    NumberReads int32 `protobuf:"varint,9,opt,name=number_reads,json=numberReads,proto3" json:"number_reads,omitempty"`
    // Whether this read did not pass filters, such as platform or vendor quality
    // controls (SAM flag 0x200).
    FailedVendorQualityChecks bool `protobuf:"varint,10,opt,name=failed_vendor_quality_checks,json=failedVendorQualityChecks,proto3" json:"failed_vendor_quality_checks,omitempty"`
    // The linear alignment for this alignment record. This field is null for
    // unmapped reads.
    Alignment *LinearAlignment `protobuf:"bytes,11,opt,name=alignment,proto3" json:"alignment,omitempty"`
    // Whether this alignment is secondary. Equivalent to SAM flag 0x100.
    // A secondary alignment represents an alternative to the primary alignment
    // for this read. Aligners may return secondary alignments if a read can map
    // ambiguously to multiple coordinates in the genome. By convention, each read
    // has one and only one alignment where both `secondaryAlignment`
    // and `supplementaryAlignment` are false.
    SecondaryAlignment bool `protobuf:"varint,12,opt,name=secondary_alignment,json=secondaryAlignment,proto3" json:"secondary_alignment,omitempty"`
    // Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
    // Supplementary alignments are used in the representation of a chimeric
    // alignment. In a chimeric alignment, a read is split into multiple
    // linear alignments that map to different reference contigs. The first
    // linear alignment in the read will be designated as the representative
    // alignment; the remaining linear alignments will be designated as
    // supplementary alignments. These alignments may have different mapping
    // quality scores. In each linear alignment in a chimeric alignment, the read
    // will be hard clipped. The `alignedSequence` and
    // `alignedQuality` fields in the alignment record will only
    // represent the bases for its respective linear alignment.
    SupplementaryAlignment bool `protobuf:"varint,13,opt,name=supplementary_alignment,json=supplementaryAlignment,proto3" json:"supplementary_alignment,omitempty"`
    // The bases of the read sequence contained in this alignment record,
    // **without CIGAR operations applied** (equivalent to SEQ in SAM).
    // `alignedSequence` and `alignedQuality` may be
    // shorter than the full read sequence and quality. This will occur if the
    // alignment is part of a chimeric alignment, or if the read was trimmed. When
    // this occurs, the CIGAR for this read will begin/end with a hard clip
    // operator that will indicate the length of the excised sequence.
    AlignedSequence string `protobuf:"bytes,14,opt,name=aligned_sequence,json=alignedSequence,proto3" json:"aligned_sequence,omitempty"`
    // The quality of the read sequence contained in this alignment record
    // (equivalent to QUAL in SAM).
    // `alignedSequence` and `alignedQuality` may be shorter than the full read
    // sequence and quality. This will occur if the alignment is part of a
    // chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR
    // for this read will begin/end with a hard clip operator that will indicate
    // the length of the excised sequence.
    AlignedQuality []int32 `protobuf:"varint,15,rep,packed,name=aligned_quality,json=alignedQuality,proto3" json:"aligned_quality,omitempty"`
    // The mapping of the primary alignment of the
    // `(readNumber+1)%numberReads` read in the fragment. It replaces
    // mate position and mate strand in SAM.
    NextMatePosition *Position `protobuf:"bytes,16,opt,name=next_mate_position,json=nextMatePosition,proto3" json:"next_mate_position,omitempty"`
    // A map of additional read alignment information. This must be of the form
    // map<string, string[]> (string key mapping to a list of string values).
    Info map[string]*_struct.ListValue `protobuf:"bytes,17,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

A read alignment describes a linear alignment of a string of DNA to a [reference sequence][google.genomics.v1.Reference], in addition to metadata about the fragment (the molecule of DNA sequenced) and the read (the bases which were read by the sequencer). A read is equivalent to a line in a SAM file. A read belongs to exactly one read group and exactly one [read group set][google.genomics.v1.ReadGroupSet].

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

### Reverse-stranded reads

Mapped reads (reads having a non-null `alignment`) can be aligned to either the forward or the reverse strand of their associated reference. Strandedness of a mapped read is encoded by `alignment.position.reverseStrand`.

If we consider the reference to be a forward-stranded coordinate space of `[0, reference.length)` with `0` as the left-most position and `reference.length` as the right-most position, reads are always aligned left to right. That is, `alignment.position.position` always refers to the left-most reference coordinate and `alignment.cigar` describes the alignment of this read to the reference from left to right. All per-base fields such as `alignedSequence` and `alignedQuality` share this same left-to-right orientation; this is true of reads which are aligned to either strand. For reverse-stranded reads, this means that `alignedSequence` is the reverse complement of the bases that were originally reported by the sequencing machine.

### Generating a reference-aligned sequence string

When interacting with mapped reads, it's often useful to produce a string representing the local alignment of the read to reference. The following pseudocode demonstrates one way of doing this:

out = ""
offset = 0
for c in read.alignment.cigar {
  switch c.operation {
  case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH":
    out += read.alignedSequence[offset:offset+c.operationLength]
    offset += c.operationLength
    break
  case "CLIP_SOFT", "INSERT":
    offset += c.operationLength
    break
  case "PAD":
    out += repeat("*", c.operationLength)
    break
  case "DELETE":
    out += repeat("-", c.operationLength)
    break
  case "SKIP":
    out += repeat(" ", c.operationLength)
    break
  case "CLIP_HARD":
    break
  }
}
return out

### Converting to SAM's CIGAR string

The following pseudocode generates a SAM CIGAR string from the `cigar` field. Note that this is a lossy conversion (`cigar.referenceSequence` is lost).

cigarMap = {
  "ALIGNMENT_MATCH": "M",
  "INSERT": "I",
  "DELETE": "D",
  "SKIP": "N",
  "CLIP_SOFT": "S",
  "CLIP_HARD": "H",
  "PAD": "P",
  "SEQUENCE_MATCH": "=",
  "SEQUENCE_MISMATCH": "X",
}
cigarStr = ""
for c in read.alignment.cigar {
  cigarStr += c.operationLength + cigarMap[c.operation]
}
return cigarStr

func (*Read) Descriptor Uses

func (*Read) Descriptor() ([]byte, []int)

Deprecated: Use Read.ProtoReflect.Descriptor instead.

func (*Read) GetAlignedQuality Uses

func (x *Read) GetAlignedQuality() []int32

func (*Read) GetAlignedSequence Uses

func (x *Read) GetAlignedSequence() string

func (*Read) GetAlignment Uses

func (x *Read) GetAlignment() *LinearAlignment

func (*Read) GetDuplicateFragment Uses

func (x *Read) GetDuplicateFragment() bool

func (*Read) GetFailedVendorQualityChecks Uses

func (x *Read) GetFailedVendorQualityChecks() bool

func (*Read) GetFragmentLength Uses

func (x *Read) GetFragmentLength() int32

func (*Read) GetFragmentName Uses

func (x *Read) GetFragmentName() string

func (*Read) GetId Uses

func (x *Read) GetId() string

func (*Read) GetInfo Uses

func (x *Read) GetInfo() map[string]*_struct.ListValue

func (*Read) GetNextMatePosition Uses

func (x *Read) GetNextMatePosition() *Position

func (*Read) GetNumberReads Uses

func (x *Read) GetNumberReads() int32

func (*Read) GetProperPlacement Uses

func (x *Read) GetProperPlacement() bool

func (*Read) GetReadGroupId Uses

func (x *Read) GetReadGroupId() string

func (*Read) GetReadGroupSetId Uses

func (x *Read) GetReadGroupSetId() string

func (*Read) GetReadNumber Uses

func (x *Read) GetReadNumber() int32

func (*Read) GetSecondaryAlignment Uses

func (x *Read) GetSecondaryAlignment() bool

func (*Read) GetSupplementaryAlignment Uses

func (x *Read) GetSupplementaryAlignment() bool

func (*Read) ProtoMessage Uses

func (*Read) ProtoMessage()

func (*Read) ProtoReflect Uses

func (x *Read) ProtoReflect() protoreflect.Message

func (*Read) Reset Uses

func (x *Read) Reset()

func (*Read) String Uses

func (x *Read) String() string

type ReadGroup Uses

type ReadGroup struct {

    // The server-generated read group ID, unique for all read groups.
    // Note: This is different than the @RG ID field in the SAM spec. For that
    // value, see [name][google.genomics.v1.ReadGroup.name].
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The dataset to which this read group belongs.
    DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    // The read group name. This corresponds to the @RG ID field in the SAM spec.
    Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
    // A free-form text description of this read group.
    Description string `protobuf:"bytes,4,opt,name=description,proto3" json:"description,omitempty"`
    // A client-supplied sample identifier for the reads in this read group.
    SampleId string `protobuf:"bytes,5,opt,name=sample_id,json=sampleId,proto3" json:"sample_id,omitempty"`
    // The experiment used to generate this read group.
    Experiment *ReadGroup_Experiment `protobuf:"bytes,6,opt,name=experiment,proto3" json:"experiment,omitempty"`
    // The predicted insert size of this read group. The insert size is the length
    // the sequenced DNA fragment from end-to-end, not including the adapters.
    PredictedInsertSize int32 `protobuf:"varint,7,opt,name=predicted_insert_size,json=predictedInsertSize,proto3" json:"predicted_insert_size,omitempty"`
    // The programs used to generate this read group. Programs are always
    // identical for all read groups within a read group set. For this reason,
    // only the first read group in a returned set will have this field
    // populated.
    Programs []*ReadGroup_Program `protobuf:"bytes,10,rep,name=programs,proto3" json:"programs,omitempty"`
    // The reference set the reads in this read group are aligned to.
    ReferenceSetId string `protobuf:"bytes,11,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    // A map of additional read group information. This must be of the form
    // map<string, string[]> (string key mapping to a list of string values).
    Info map[string]*_struct.ListValue `protobuf:"bytes,12,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

A read group is all the data that's processed the same way by the sequencer.

func (*ReadGroup) Descriptor Uses

func (*ReadGroup) Descriptor() ([]byte, []int)

Deprecated: Use ReadGroup.ProtoReflect.Descriptor instead.

func (*ReadGroup) GetDatasetId Uses

func (x *ReadGroup) GetDatasetId() string

func (*ReadGroup) GetDescription Uses

func (x *ReadGroup) GetDescription() string

func (*ReadGroup) GetExperiment Uses

func (x *ReadGroup) GetExperiment() *ReadGroup_Experiment

func (*ReadGroup) GetId Uses

func (x *ReadGroup) GetId() string

func (*ReadGroup) GetInfo Uses

func (x *ReadGroup) GetInfo() map[string]*_struct.ListValue

func (*ReadGroup) GetName Uses

func (x *ReadGroup) GetName() string

func (*ReadGroup) GetPredictedInsertSize Uses

func (x *ReadGroup) GetPredictedInsertSize() int32

func (*ReadGroup) GetPrograms Uses

func (x *ReadGroup) GetPrograms() []*ReadGroup_Program

func (*ReadGroup) GetReferenceSetId Uses

func (x *ReadGroup) GetReferenceSetId() string

func (*ReadGroup) GetSampleId Uses

func (x *ReadGroup) GetSampleId() string

func (*ReadGroup) ProtoMessage Uses

func (*ReadGroup) ProtoMessage()

func (*ReadGroup) ProtoReflect Uses

func (x *ReadGroup) ProtoReflect() protoreflect.Message

func (*ReadGroup) Reset Uses

func (x *ReadGroup) Reset()

func (*ReadGroup) String Uses

func (x *ReadGroup) String() string

type ReadGroupSet Uses

type ReadGroupSet struct {

    // The server-generated read group set ID, unique for all read group sets.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The dataset to which this read group set belongs.
    DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    // The reference set to which the reads in this read group set are aligned.
    ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    // The read group set name. By default this will be initialized to the sample
    // name of the sequenced data contained in this set.
    Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
    // The filename of the original source file for this read group set, if any.
    Filename string `protobuf:"bytes,5,opt,name=filename,proto3" json:"filename,omitempty"`
    // The read groups in this set. There are typically 1-10 read groups in a read
    // group set.
    ReadGroups []*ReadGroup `protobuf:"bytes,6,rep,name=read_groups,json=readGroups,proto3" json:"read_groups,omitempty"`
    // A map of additional read group set information.
    Info map[string]*_struct.ListValue `protobuf:"bytes,7,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

A read group set is a logical collection of read groups, which are collections of reads produced by a sequencer. A read group set typically models reads corresponding to one sample, sequenced one way, and aligned one way.

* A read group set belongs to one dataset. * A read group belongs to one read group set. * A read belongs to one read group.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*ReadGroupSet) Descriptor Uses

func (*ReadGroupSet) Descriptor() ([]byte, []int)

Deprecated: Use ReadGroupSet.ProtoReflect.Descriptor instead.

func (*ReadGroupSet) GetDatasetId Uses

func (x *ReadGroupSet) GetDatasetId() string

func (*ReadGroupSet) GetFilename Uses

func (x *ReadGroupSet) GetFilename() string

func (*ReadGroupSet) GetId Uses

func (x *ReadGroupSet) GetId() string

func (*ReadGroupSet) GetInfo Uses

func (x *ReadGroupSet) GetInfo() map[string]*_struct.ListValue

func (*ReadGroupSet) GetName Uses

func (x *ReadGroupSet) GetName() string

func (*ReadGroupSet) GetReadGroups Uses

func (x *ReadGroupSet) GetReadGroups() []*ReadGroup

func (*ReadGroupSet) GetReferenceSetId Uses

func (x *ReadGroupSet) GetReferenceSetId() string

func (*ReadGroupSet) ProtoMessage Uses

func (*ReadGroupSet) ProtoMessage()

func (*ReadGroupSet) ProtoReflect Uses

func (x *ReadGroupSet) ProtoReflect() protoreflect.Message

func (*ReadGroupSet) Reset Uses

func (x *ReadGroupSet) Reset()

func (*ReadGroupSet) String Uses

func (x *ReadGroupSet) String() string

type ReadGroup_Experiment Uses

type ReadGroup_Experiment struct {

    // A client-supplied library identifier; a library is a collection of DNA
    // fragments which have been prepared for sequencing from a sample. This
    // field is important for quality control as error or bias can be introduced
    // during sample preparation.
    LibraryId string `protobuf:"bytes,1,opt,name=library_id,json=libraryId,proto3" json:"library_id,omitempty"`
    // The platform unit used as part of this experiment, for example
    // flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
    // @RG PU field in the SAM spec.
    PlatformUnit string `protobuf:"bytes,2,opt,name=platform_unit,json=platformUnit,proto3" json:"platform_unit,omitempty"`
    // The sequencing center used as part of this experiment.
    SequencingCenter string `protobuf:"bytes,3,opt,name=sequencing_center,json=sequencingCenter,proto3" json:"sequencing_center,omitempty"`
    // The instrument model used as part of this experiment. This maps to
    // sequencing technology in the SAM spec.
    InstrumentModel string `protobuf:"bytes,4,opt,name=instrument_model,json=instrumentModel,proto3" json:"instrument_model,omitempty"`
    // contains filtered or unexported fields
}

func (*ReadGroup_Experiment) Descriptor Uses

func (*ReadGroup_Experiment) Descriptor() ([]byte, []int)

Deprecated: Use ReadGroup_Experiment.ProtoReflect.Descriptor instead.

func (*ReadGroup_Experiment) GetInstrumentModel Uses

func (x *ReadGroup_Experiment) GetInstrumentModel() string

func (*ReadGroup_Experiment) GetLibraryId Uses

func (x *ReadGroup_Experiment) GetLibraryId() string

func (*ReadGroup_Experiment) GetPlatformUnit Uses

func (x *ReadGroup_Experiment) GetPlatformUnit() string

func (*ReadGroup_Experiment) GetSequencingCenter Uses

func (x *ReadGroup_Experiment) GetSequencingCenter() string

func (*ReadGroup_Experiment) ProtoMessage Uses

func (*ReadGroup_Experiment) ProtoMessage()

func (*ReadGroup_Experiment) ProtoReflect Uses

func (x *ReadGroup_Experiment) ProtoReflect() protoreflect.Message

func (*ReadGroup_Experiment) Reset Uses

func (x *ReadGroup_Experiment) Reset()

func (*ReadGroup_Experiment) String Uses

func (x *ReadGroup_Experiment) String() string

type ReadGroup_Program Uses

type ReadGroup_Program struct {

    // The command line used to run this program.
    CommandLine string `protobuf:"bytes,1,opt,name=command_line,json=commandLine,proto3" json:"command_line,omitempty"`
    // The user specified locally unique ID of the program. Used along with
    // `prevProgramId` to define an ordering between programs.
    Id  string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
    // The display name of the program. This is typically the colloquial name of
    // the tool used, for example 'bwa' or 'picard'.
    Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
    // The ID of the program run before this one.
    PrevProgramId string `protobuf:"bytes,4,opt,name=prev_program_id,json=prevProgramId,proto3" json:"prev_program_id,omitempty"`
    // The version of the program run.
    Version string `protobuf:"bytes,5,opt,name=version,proto3" json:"version,omitempty"`
    // contains filtered or unexported fields
}

func (*ReadGroup_Program) Descriptor Uses

func (*ReadGroup_Program) Descriptor() ([]byte, []int)

Deprecated: Use ReadGroup_Program.ProtoReflect.Descriptor instead.

func (*ReadGroup_Program) GetCommandLine Uses

func (x *ReadGroup_Program) GetCommandLine() string

func (*ReadGroup_Program) GetId Uses

func (x *ReadGroup_Program) GetId() string

func (*ReadGroup_Program) GetName Uses

func (x *ReadGroup_Program) GetName() string

func (*ReadGroup_Program) GetPrevProgramId Uses

func (x *ReadGroup_Program) GetPrevProgramId() string

func (*ReadGroup_Program) GetVersion Uses

func (x *ReadGroup_Program) GetVersion() string

func (*ReadGroup_Program) ProtoMessage Uses

func (*ReadGroup_Program) ProtoMessage()

func (*ReadGroup_Program) ProtoReflect Uses

func (x *ReadGroup_Program) ProtoReflect() protoreflect.Message

func (*ReadGroup_Program) Reset Uses

func (x *ReadGroup_Program) Reset()

func (*ReadGroup_Program) String Uses

func (x *ReadGroup_Program) String() string

type ReadServiceV1Client Uses

type ReadServiceV1Client interface {
    // Creates read group sets by asynchronously importing the provided
    // information.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // The caller must have WRITE permissions to the dataset.
    //
    // ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import
    //
    // - Tags will be converted to strings - tag types are not preserved
    // - Comments (`@CO`) in the input file header will not be preserved
    // - Original header order of references (`@SQ`) will not be preserved
    // - Any reverse stranded unmapped reads will be reverse complemented, and
    // their qualities (also the "BQ" and "OQ" tags, if any) will be reversed
    // - Unmapped reads will be stripped of positional information (reference name
    // and position)
    ImportReadGroupSets(ctx context.Context, in *ImportReadGroupSetsRequest, opts ...grpc.CallOption) (*longrunning.Operation, error)
    // Exports a read group set to a BAM file in Google Cloud Storage.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Note that currently there may be some differences between exported BAM
    // files and the original BAM file at the time of import. See
    // [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets]
    // for caveats.
    ExportReadGroupSet(ctx context.Context, in *ExportReadGroupSetRequest, opts ...grpc.CallOption) (*longrunning.Operation, error)
    // Searches for read group sets matching the criteria.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
    SearchReadGroupSets(ctx context.Context, in *SearchReadGroupSetsRequest, opts ...grpc.CallOption) (*SearchReadGroupSetsResponse, error)
    // Updates a read group set.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // This method supports patch semantics.
    UpdateReadGroupSet(ctx context.Context, in *UpdateReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error)
    // Deletes a read group set.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    DeleteReadGroupSet(ctx context.Context, in *DeleteReadGroupSetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
    // Gets a read group set by ID.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    GetReadGroupSet(ctx context.Context, in *GetReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error)
    // Lists fixed width coverage buckets for a read group set, each of which
    // correspond to a range of a reference sequence. Each bucket summarizes
    // coverage information across its corresponding genomic range.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Coverage is defined as the number of reads which are aligned to a given
    // base in the reference sequence. Coverage buckets are available at several
    // precomputed bucket widths, enabling retrieval of various coverage 'zoom
    // levels'. The caller must have READ permissions for the target read group
    // set.
    ListCoverageBuckets(ctx context.Context, in *ListCoverageBucketsRequest, opts ...grpc.CallOption) (*ListCoverageBucketsResponse, error)
    // Gets a list of reads for one or more read group sets.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Reads search operates over a genomic coordinate space of reference sequence
    // & position defined over the reference sequences to which the requested
    // read group sets are aligned.
    //
    // If a target positional range is specified, search returns all reads whose
    // alignment to the reference genome overlap the range. A query which
    // specifies only read group set IDs yields all reads in those read group
    // sets, including unmapped reads.
    //
    // All reads returned (including reads on subsequent pages) are ordered by
    // genomic coordinate (by reference sequence, then position). Reads with
    // equivalent genomic coordinates are returned in an unspecified order. This
    // order is consistent, such that two queries for the same content (regardless
    // of page size) yield reads in the same order across their respective streams
    // of paginated responses.
    //
    // Implements
    // [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).
    SearchReads(ctx context.Context, in *SearchReadsRequest, opts ...grpc.CallOption) (*SearchReadsResponse, error)
}

ReadServiceV1Client is the client API for ReadServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewReadServiceV1Client Uses

func NewReadServiceV1Client(cc grpc.ClientConnInterface) ReadServiceV1Client

type ReadServiceV1Server Uses

type ReadServiceV1Server interface {
    // Creates read group sets by asynchronously importing the provided
    // information.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // The caller must have WRITE permissions to the dataset.
    //
    // ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import
    //
    // - Tags will be converted to strings - tag types are not preserved
    // - Comments (`@CO`) in the input file header will not be preserved
    // - Original header order of references (`@SQ`) will not be preserved
    // - Any reverse stranded unmapped reads will be reverse complemented, and
    // their qualities (also the "BQ" and "OQ" tags, if any) will be reversed
    // - Unmapped reads will be stripped of positional information (reference name
    // and position)
    ImportReadGroupSets(context.Context, *ImportReadGroupSetsRequest) (*longrunning.Operation, error)
    // Exports a read group set to a BAM file in Google Cloud Storage.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Note that currently there may be some differences between exported BAM
    // files and the original BAM file at the time of import. See
    // [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets]
    // for caveats.
    ExportReadGroupSet(context.Context, *ExportReadGroupSetRequest) (*longrunning.Operation, error)
    // Searches for read group sets matching the criteria.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
    SearchReadGroupSets(context.Context, *SearchReadGroupSetsRequest) (*SearchReadGroupSetsResponse, error)
    // Updates a read group set.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // This method supports patch semantics.
    UpdateReadGroupSet(context.Context, *UpdateReadGroupSetRequest) (*ReadGroupSet, error)
    // Deletes a read group set.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    DeleteReadGroupSet(context.Context, *DeleteReadGroupSetRequest) (*empty.Empty, error)
    // Gets a read group set by ID.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    GetReadGroupSet(context.Context, *GetReadGroupSetRequest) (*ReadGroupSet, error)
    // Lists fixed width coverage buckets for a read group set, each of which
    // correspond to a range of a reference sequence. Each bucket summarizes
    // coverage information across its corresponding genomic range.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Coverage is defined as the number of reads which are aligned to a given
    // base in the reference sequence. Coverage buckets are available at several
    // precomputed bucket widths, enabling retrieval of various coverage 'zoom
    // levels'. The caller must have READ permissions for the target read group
    // set.
    ListCoverageBuckets(context.Context, *ListCoverageBucketsRequest) (*ListCoverageBucketsResponse, error)
    // Gets a list of reads for one or more read group sets.
    //
    // For the definitions of read group sets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Reads search operates over a genomic coordinate space of reference sequence
    // & position defined over the reference sequences to which the requested
    // read group sets are aligned.
    //
    // If a target positional range is specified, search returns all reads whose
    // alignment to the reference genome overlap the range. A query which
    // specifies only read group set IDs yields all reads in those read group
    // sets, including unmapped reads.
    //
    // All reads returned (including reads on subsequent pages) are ordered by
    // genomic coordinate (by reference sequence, then position). Reads with
    // equivalent genomic coordinates are returned in an unspecified order. This
    // order is consistent, such that two queries for the same content (regardless
    // of page size) yield reads in the same order across their respective streams
    // of paginated responses.
    //
    // Implements
    // [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).
    SearchReads(context.Context, *SearchReadsRequest) (*SearchReadsResponse, error)
}

ReadServiceV1Server is the server API for ReadServiceV1 service.

type Reference Uses

type Reference struct {

    // The server-generated reference ID, unique across all references.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The length of this reference's sequence.
    Length int64 `protobuf:"varint,2,opt,name=length,proto3" json:"length,omitempty"`
    // MD5 of the upper-case sequence excluding all whitespace characters (this
    // is equivalent to SQ:M5 in SAM). This value is represented in lower case
    // hexadecimal format.
    Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"`
    // The name of this reference, for example `22`.
    Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
    // The URI from which the sequence was obtained. Typically specifies a FASTA
    // format file.
    SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
    // All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
    // with a version number, for example `GCF_000001405.26`.
    SourceAccessions []string `protobuf:"bytes,6,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"`
    // ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
    NcbiTaxonId int32 `protobuf:"varint,7,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"`
    // contains filtered or unexported fields
}

A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*Reference) Descriptor Uses

func (*Reference) Descriptor() ([]byte, []int)

Deprecated: Use Reference.ProtoReflect.Descriptor instead.

func (*Reference) GetId Uses

func (x *Reference) GetId() string

func (*Reference) GetLength Uses

func (x *Reference) GetLength() int64

func (*Reference) GetMd5Checksum Uses

func (x *Reference) GetMd5Checksum() string

func (*Reference) GetName Uses

func (x *Reference) GetName() string

func (*Reference) GetNcbiTaxonId Uses

func (x *Reference) GetNcbiTaxonId() int32

func (*Reference) GetSourceAccessions Uses

func (x *Reference) GetSourceAccessions() []string

func (*Reference) GetSourceUri Uses

func (x *Reference) GetSourceUri() string

func (*Reference) ProtoMessage Uses

func (*Reference) ProtoMessage()

func (*Reference) ProtoReflect Uses

func (x *Reference) ProtoReflect() protoreflect.Message

func (*Reference) Reset Uses

func (x *Reference) Reset()

func (*Reference) String Uses

func (x *Reference) String() string

type ReferenceBound Uses

type ReferenceBound struct {

    // The name of the reference associated with this reference bound.
    ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // An upper bound (inclusive) on the starting coordinate of any
    // variant in the reference sequence.
    UpperBound int64 `protobuf:"varint,2,opt,name=upper_bound,json=upperBound,proto3" json:"upper_bound,omitempty"`
    // contains filtered or unexported fields
}

ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.

func (*ReferenceBound) Descriptor Uses

func (*ReferenceBound) Descriptor() ([]byte, []int)

Deprecated: Use ReferenceBound.ProtoReflect.Descriptor instead.

func (*ReferenceBound) GetReferenceName Uses

func (x *ReferenceBound) GetReferenceName() string

func (*ReferenceBound) GetUpperBound Uses

func (x *ReferenceBound) GetUpperBound() int64

func (*ReferenceBound) ProtoMessage Uses

func (*ReferenceBound) ProtoMessage()

func (*ReferenceBound) ProtoReflect Uses

func (x *ReferenceBound) ProtoReflect() protoreflect.Message

func (*ReferenceBound) Reset Uses

func (x *ReferenceBound) Reset()

func (*ReferenceBound) String Uses

func (x *ReferenceBound) String() string

type ReferenceServiceV1Client Uses

type ReferenceServiceV1Client interface {
    // Searches for reference sets which match the given criteria.
    //
    // For the definitions of references and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
    SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error)
    // Gets a reference set.
    //
    // For the definitions of references and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
    GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error)
    // Searches for references which match the given criteria.
    //
    // For the definitions of references and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
    SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error)
    // Gets a reference.
    //
    // For the definitions of references and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
    GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error)
    // Lists the bases in a reference, optionally restricted to a range.
    //
    // For the definitions of references and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
    ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error)
}

ReferenceServiceV1Client is the client API for ReferenceServiceV1 service.

For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.

func NewReferenceServiceV1Client Uses

func NewReferenceServiceV1Client(cc grpc.ClientConnInterface) ReferenceServiceV1Client

type ReferenceServiceV1Server Uses

type ReferenceServiceV1Server interface {
    // Searches for reference sets which match the given criteria.
    //
    // For the definitions of references and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
    SearchReferenceSets(context.Context, *SearchReferenceSetsRequest) (*SearchReferenceSetsResponse, error)
    // Gets a reference set.
    //
    // For the definitions of references and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
    GetReferenceSet(context.Context, *GetReferenceSetRequest) (*ReferenceSet, error)
    // Searches for references which match the given criteria.
    //
    // For the definitions of references and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
    SearchReferences(context.Context, *SearchReferencesRequest) (*SearchReferencesResponse, error)
    // Gets a reference.
    //
    // For the definitions of references and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
    GetReference(context.Context, *GetReferenceRequest) (*Reference, error)
    // Lists the bases in a reference, optionally restricted to a range.
    //
    // For the definitions of references and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // Implements
    // [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
    ListBases(context.Context, *ListBasesRequest) (*ListBasesResponse, error)
}

ReferenceServiceV1Server is the server API for ReferenceServiceV1 service.

type ReferenceSet Uses

type ReferenceSet struct {

    // The server-generated reference set ID, unique across all reference sets.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The IDs of the reference objects that are part of this set.
    // `Reference.md5checksum` must be unique within this set.
    ReferenceIds []string `protobuf:"bytes,2,rep,name=reference_ids,json=referenceIds,proto3" json:"reference_ids,omitempty"`
    // Order-independent MD5 checksum which identifies this reference set. The
    // checksum is computed by sorting all lower case hexidecimal string
    // `reference.md5checksum` (for all reference in this set) in
    // ascending lexicographic order, concatenating, and taking the MD5 of that
    // value. The resulting value is represented in lower case hexadecimal format.
    Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"`
    // ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
    // indicating the species which this reference set is intended to model. Note
    // that contained references may specify a different `ncbiTaxonId`, as
    // assemblies may contain reference sequences which do not belong to the
    // modeled species, for example EBV in a human reference genome.
    NcbiTaxonId int32 `protobuf:"varint,4,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"`
    // Free text description of this reference set.
    Description string `protobuf:"bytes,5,opt,name=description,proto3" json:"description,omitempty"`
    // Public id of this reference set, such as `GRCh37`.
    AssemblyId string `protobuf:"bytes,6,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"`
    // The URI from which the references were obtained.
    SourceUri string `protobuf:"bytes,7,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
    // All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
    // with a version number, for example `NC_000001.11`.
    SourceAccessions []string `protobuf:"bytes,8,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"`
    // contains filtered or unexported fields
}

A reference set is a set of references which typically comprise a reference assembly for a species, such as `GRCh38` which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references.

For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

func (*ReferenceSet) Descriptor Uses

func (*ReferenceSet) Descriptor() ([]byte, []int)

Deprecated: Use ReferenceSet.ProtoReflect.Descriptor instead.

func (*ReferenceSet) GetAssemblyId Uses

func (x *ReferenceSet) GetAssemblyId() string

func (*ReferenceSet) GetDescription Uses

func (x *ReferenceSet) GetDescription() string

func (*ReferenceSet) GetId Uses

func (x *ReferenceSet) GetId() string

func (*ReferenceSet) GetMd5Checksum Uses

func (x *ReferenceSet) GetMd5Checksum() string

func (*ReferenceSet) GetNcbiTaxonId Uses

func (x *ReferenceSet) GetNcbiTaxonId() int32

func (*ReferenceSet) GetReferenceIds Uses

func (x *ReferenceSet) GetReferenceIds() []string

func (*ReferenceSet) GetSourceAccessions Uses

func (x *ReferenceSet) GetSourceAccessions() []string

func (*ReferenceSet) GetSourceUri Uses

func (x *ReferenceSet) GetSourceUri() string

func (*ReferenceSet) ProtoMessage Uses

func (*ReferenceSet) ProtoMessage()

func (*ReferenceSet) ProtoReflect Uses

func (x *ReferenceSet) ProtoReflect() protoreflect.Message

func (*ReferenceSet) Reset Uses

func (x *ReferenceSet) Reset()

func (*ReferenceSet) String Uses

func (x *ReferenceSet) String() string

type SearchAnnotationSetsRequest Uses

type SearchAnnotationSetsRequest struct {

    // Required. The dataset IDs to search within. Caller must have `READ` access
    // to these datasets.
    DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"`
    // If specified, only annotation sets associated with the given reference set
    // are returned.
    ReferenceSetId string `protobuf:"bytes,2,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    // Only return annotations sets for which a substring of the name matches this
    // string (case insensitive).
    Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
    // If specified, only annotation sets that have any of these types are
    // returned.
    Types []AnnotationType `protobuf:"varint,4,rep,packed,name=types,proto3,enum=google.genomics.v1.AnnotationType" json:"types,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,5,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 128. The maximum value is 1024.
    PageSize int32 `protobuf:"varint,6,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

func (*SearchAnnotationSetsRequest) Descriptor Uses

func (*SearchAnnotationSetsRequest) Descriptor() ([]byte, []int)

Deprecated: Use SearchAnnotationSetsRequest.ProtoReflect.Descriptor instead.

func (*SearchAnnotationSetsRequest) GetDatasetIds Uses

func (x *SearchAnnotationSetsRequest) GetDatasetIds() []string

func (*SearchAnnotationSetsRequest) GetName Uses

func (x *SearchAnnotationSetsRequest) GetName() string

func (*SearchAnnotationSetsRequest) GetPageSize Uses

func (x *SearchAnnotationSetsRequest) GetPageSize() int32

func (*SearchAnnotationSetsRequest) GetPageToken Uses

func (x *SearchAnnotationSetsRequest) GetPageToken() string

func (*SearchAnnotationSetsRequest) GetReferenceSetId Uses

func (x *SearchAnnotationSetsRequest) GetReferenceSetId() string

func (*SearchAnnotationSetsRequest) GetTypes Uses

func (x *SearchAnnotationSetsRequest) GetTypes() []AnnotationType

func (*SearchAnnotationSetsRequest) ProtoMessage Uses

func (*SearchAnnotationSetsRequest) ProtoMessage()

func (*SearchAnnotationSetsRequest) ProtoReflect Uses

func (x *SearchAnnotationSetsRequest) ProtoReflect() protoreflect.Message

func (*SearchAnnotationSetsRequest) Reset Uses

func (x *SearchAnnotationSetsRequest) Reset()

func (*SearchAnnotationSetsRequest) String Uses

func (x *SearchAnnotationSetsRequest) String() string

type SearchAnnotationSetsResponse Uses

type SearchAnnotationSetsResponse struct {

    // The matching annotation sets.
    AnnotationSets []*AnnotationSet `protobuf:"bytes,1,rep,name=annotation_sets,json=annotationSets,proto3" json:"annotation_sets,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

func (*SearchAnnotationSetsResponse) Descriptor Uses

func (*SearchAnnotationSetsResponse) Descriptor() ([]byte, []int)

Deprecated: Use SearchAnnotationSetsResponse.ProtoReflect.Descriptor instead.

func (*SearchAnnotationSetsResponse) GetAnnotationSets Uses

func (x *SearchAnnotationSetsResponse) GetAnnotationSets() []*AnnotationSet

func (*SearchAnnotationSetsResponse) GetNextPageToken Uses

func (x *SearchAnnotationSetsResponse) GetNextPageToken() string

func (*SearchAnnotationSetsResponse) ProtoMessage Uses

func (*SearchAnnotationSetsResponse) ProtoMessage()

func (*SearchAnnotationSetsResponse) ProtoReflect Uses

func (x *SearchAnnotationSetsResponse) ProtoReflect() protoreflect.Message

func (*SearchAnnotationSetsResponse) Reset Uses

func (x *SearchAnnotationSetsResponse) Reset()

func (*SearchAnnotationSetsResponse) String Uses

func (x *SearchAnnotationSetsResponse) String() string

type SearchAnnotationsRequest Uses

type SearchAnnotationsRequest struct {

    // Required. The annotation sets to search within. The caller must have
    // `READ` access to these annotation sets.
    // All queried annotation sets must have the same type.
    AnnotationSetIds []string `protobuf:"bytes,1,rep,name=annotation_set_ids,json=annotationSetIds,proto3" json:"annotation_set_ids,omitempty"`
    // Required. `reference_id` or `reference_name` must be set.
    //
    // Types that are assignable to Reference:
    //	*SearchAnnotationsRequest_ReferenceId
    //	*SearchAnnotationsRequest_ReferenceName
    Reference isSearchAnnotationsRequest_Reference `protobuf_oneof:"reference"`
    // The start position of the range on the reference, 0-based inclusive. If
    // specified,
    // [referenceId][google.genomics.v1.SearchAnnotationsRequest.reference_id] or
    // [referenceName][google.genomics.v1.SearchAnnotationsRequest.reference_name]
    // must be specified. Defaults to 0.
    Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
    // The end position of the range on the reference, 0-based exclusive. If
    // [referenceId][google.genomics.v1.SearchAnnotationsRequest.reference_id] or
    // [referenceName][google.genomics.v1.SearchAnnotationsRequest.reference_name]
    // must be specified, Defaults to the length of the reference.
    End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,6,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 256. The maximum value is 2048.
    PageSize int32 `protobuf:"varint,7,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

func (*SearchAnnotationsRequest) Descriptor Uses

func (*SearchAnnotationsRequest) Descriptor() ([]byte, []int)

Deprecated: Use SearchAnnotationsRequest.ProtoReflect.Descriptor instead.

func (*SearchAnnotationsRequest) GetAnnotationSetIds Uses

func (x *SearchAnnotationsRequest) GetAnnotationSetIds() []string

func (*SearchAnnotationsRequest) GetEnd Uses

func (x *SearchAnnotationsRequest) GetEnd() int64

func (*SearchAnnotationsRequest) GetPageSize Uses

func (x *SearchAnnotationsRequest) GetPageSize() int32

func (*SearchAnnotationsRequest) GetPageToken Uses

func (x *SearchAnnotationsRequest) GetPageToken() string

func (*SearchAnnotationsRequest) GetReference Uses

func (m *SearchAnnotationsRequest) GetReference() isSearchAnnotationsRequest_Reference

func (*SearchAnnotationsRequest) GetReferenceId Uses

func (x *SearchAnnotationsRequest) GetReferenceId() string

func (*SearchAnnotationsRequest) GetReferenceName Uses

func (x *SearchAnnotationsRequest) GetReferenceName() string

func (*SearchAnnotationsRequest) GetStart Uses

func (x *SearchAnnotationsRequest) GetStart() int64

func (*SearchAnnotationsRequest) ProtoMessage Uses

func (*SearchAnnotationsRequest) ProtoMessage()

func (*SearchAnnotationsRequest) ProtoReflect Uses

func (x *SearchAnnotationsRequest) ProtoReflect() protoreflect.Message

func (*SearchAnnotationsRequest) Reset Uses

func (x *SearchAnnotationsRequest) Reset()

func (*SearchAnnotationsRequest) String Uses

func (x *SearchAnnotationsRequest) String() string

type SearchAnnotationsRequest_ReferenceId Uses

type SearchAnnotationsRequest_ReferenceId struct {
    // The ID of the reference to query.
    ReferenceId string `protobuf:"bytes,2,opt,name=reference_id,json=referenceId,proto3,oneof"`
}

type SearchAnnotationsRequest_ReferenceName Uses

type SearchAnnotationsRequest_ReferenceName struct {
    // The name of the reference to query, within the reference set associated
    // with this query.
    ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3,oneof"`
}

type SearchAnnotationsResponse Uses

type SearchAnnotationsResponse struct {

    // The matching annotations.
    Annotations []*Annotation `protobuf:"bytes,1,rep,name=annotations,proto3" json:"annotations,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

func (*SearchAnnotationsResponse) Descriptor Uses

func (*SearchAnnotationsResponse) Descriptor() ([]byte, []int)

Deprecated: Use SearchAnnotationsResponse.ProtoReflect.Descriptor instead.

func (*SearchAnnotationsResponse) GetAnnotations Uses

func (x *SearchAnnotationsResponse) GetAnnotations() []*Annotation

func (*SearchAnnotationsResponse) GetNextPageToken Uses

func (x *SearchAnnotationsResponse) GetNextPageToken() string

func (*SearchAnnotationsResponse) ProtoMessage Uses

func (*SearchAnnotationsResponse) ProtoMessage()

func (*SearchAnnotationsResponse) ProtoReflect Uses

func (x *SearchAnnotationsResponse) ProtoReflect() protoreflect.Message

func (*SearchAnnotationsResponse) Reset Uses

func (x *SearchAnnotationsResponse) Reset()

func (*SearchAnnotationsResponse) String Uses

func (x *SearchAnnotationsResponse) String() string

type SearchCallSetsRequest Uses

type SearchCallSetsRequest struct {

    // Restrict the query to call sets within the given variant sets. At least one
    // ID must be provided.
    VariantSetIds []string `protobuf:"bytes,1,rep,name=variant_set_ids,json=variantSetIds,proto3" json:"variant_set_ids,omitempty"`
    // Only return call sets for which a substring of the name matches this
    // string.
    Name string `protobuf:"bytes,2,opt,name=name,proto3" json:"name,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 1024.
    PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

The call set search request.

func (*SearchCallSetsRequest) Descriptor Uses

func (*SearchCallSetsRequest) Descriptor() ([]byte, []int)

Deprecated: Use SearchCallSetsRequest.ProtoReflect.Descriptor instead.

func (*SearchCallSetsRequest) GetName Uses

func (x *SearchCallSetsRequest) GetName() string

func (*SearchCallSetsRequest) GetPageSize Uses

func (x *SearchCallSetsRequest) GetPageSize() int32

func (*SearchCallSetsRequest) GetPageToken Uses

func (x *SearchCallSetsRequest) GetPageToken() string

func (*SearchCallSetsRequest) GetVariantSetIds Uses

func (x *SearchCallSetsRequest) GetVariantSetIds() []string

func (*SearchCallSetsRequest) ProtoMessage Uses

func (*SearchCallSetsRequest) ProtoMessage()

func (*SearchCallSetsRequest) ProtoReflect Uses

func (x *SearchCallSetsRequest) ProtoReflect() protoreflect.Message

func (*SearchCallSetsRequest) Reset Uses

func (x *SearchCallSetsRequest) Reset()

func (*SearchCallSetsRequest) String Uses

func (x *SearchCallSetsRequest) String() string

type SearchCallSetsResponse Uses

type SearchCallSetsResponse struct {

    // The list of matching call sets.
    CallSets []*CallSet `protobuf:"bytes,1,rep,name=call_sets,json=callSets,proto3" json:"call_sets,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

The call set search response.

func (*SearchCallSetsResponse) Descriptor Uses

func (*SearchCallSetsResponse) Descriptor() ([]byte, []int)

Deprecated: Use SearchCallSetsResponse.ProtoReflect.Descriptor instead.

func (*SearchCallSetsResponse) GetCallSets Uses

func (x *SearchCallSetsResponse) GetCallSets() []*CallSet

func (*SearchCallSetsResponse) GetNextPageToken Uses

func (x *SearchCallSetsResponse) GetNextPageToken() string

func (*SearchCallSetsResponse) ProtoMessage Uses

func (*SearchCallSetsResponse) ProtoMessage()

func (*SearchCallSetsResponse) ProtoReflect Uses

func (x *SearchCallSetsResponse) ProtoReflect() protoreflect.Message

func (*SearchCallSetsResponse) Reset Uses

func (x *SearchCallSetsResponse) Reset()

func (*SearchCallSetsResponse) String Uses

func (x *SearchCallSetsResponse) String() string

type SearchReadGroupSetsRequest Uses

type SearchReadGroupSetsRequest struct {

    // Restricts this query to read group sets within the given datasets. At least
    // one ID must be provided.
    DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"`
    // Only return read group sets for which a substring of the name matches this
    // string.
    Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,2,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 256. The maximum value is 1024.
    PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

The read group set search request.

func (*SearchReadGroupSetsRequest) Descriptor Uses

func (*SearchReadGroupSetsRequest) Descriptor() ([]byte, []int)

Deprecated: Use SearchReadGroupSetsRequest.ProtoReflect.Descriptor instead.

func (*SearchReadGroupSetsRequest) GetDatasetIds Uses

func (x *SearchReadGroupSetsRequest) GetDatasetIds() []string

func (*SearchReadGroupSetsRequest) GetName Uses

func (x *SearchReadGroupSetsRequest) GetName() string

func (*SearchReadGroupSetsRequest) GetPageSize Uses

func (x *SearchReadGroupSetsRequest) GetPageSize() int32

func (*SearchReadGroupSetsRequest) GetPageToken Uses

func (x *SearchReadGroupSetsRequest) GetPageToken() string

func (*SearchReadGroupSetsRequest) ProtoMessage Uses

func (*SearchReadGroupSetsRequest) ProtoMessage()

func (*SearchReadGroupSetsRequest) ProtoReflect Uses

func (x *SearchReadGroupSetsRequest) ProtoReflect() protoreflect.Message

func (*SearchReadGroupSetsRequest) Reset Uses

func (x *SearchReadGroupSetsRequest) Reset()

func (*SearchReadGroupSetsRequest) String Uses

func (x *SearchReadGroupSetsRequest) String() string

type SearchReadGroupSetsResponse Uses

type SearchReadGroupSetsResponse struct {

    // The list of matching read group sets.
    ReadGroupSets []*ReadGroupSet `protobuf:"bytes,1,rep,name=read_group_sets,json=readGroupSets,proto3" json:"read_group_sets,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

The read group set search response.

func (*SearchReadGroupSetsResponse) Descriptor Uses

func (*SearchReadGroupSetsResponse) Descriptor() ([]byte, []int)

Deprecated: Use SearchReadGroupSetsResponse.ProtoReflect.Descriptor instead.

func (*SearchReadGroupSetsResponse) GetNextPageToken Uses

func (x *SearchReadGroupSetsResponse) GetNextPageToken() string

func (*SearchReadGroupSetsResponse) GetReadGroupSets Uses

func (x *SearchReadGroupSetsResponse) GetReadGroupSets() []*ReadGroupSet

func (*SearchReadGroupSetsResponse) ProtoMessage Uses

func (*SearchReadGroupSetsResponse) ProtoMessage()

func (*SearchReadGroupSetsResponse) ProtoReflect Uses

func (x *SearchReadGroupSetsResponse) ProtoReflect() protoreflect.Message

func (*SearchReadGroupSetsResponse) Reset Uses

func (x *SearchReadGroupSetsResponse) Reset()

func (*SearchReadGroupSetsResponse) String Uses

func (x *SearchReadGroupSetsResponse) String() string

type SearchReadsRequest Uses

type SearchReadsRequest struct {

    // The IDs of the read groups sets within which to search for reads. All
    // specified read group sets must be aligned against a common set of reference
    // sequences; this defines the genomic coordinates for the query. Must specify
    // one of `readGroupSetIds` or `readGroupIds`.
    ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"`
    // The IDs of the read groups within which to search for reads. All specified
    // read groups must belong to the same read group sets. Must specify one of
    // `readGroupSetIds` or `readGroupIds`.
    ReadGroupIds []string `protobuf:"bytes,5,rep,name=read_group_ids,json=readGroupIds,proto3" json:"read_group_ids,omitempty"`
    // The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to
    // `*`, only unmapped reads are returned. If unspecified, all reads (mapped
    // and unmapped) are returned.
    ReferenceName string `protobuf:"bytes,7,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The start position of the range on the reference, 0-based inclusive. If
    // specified, `referenceName` must also be specified.
    Start int64 `protobuf:"varint,8,opt,name=start,proto3" json:"start,omitempty"`
    // The end position of the range on the reference, 0-based exclusive. If
    // specified, `referenceName` must also be specified.
    End int64 `protobuf:"varint,9,opt,name=end,proto3" json:"end,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 256. The maximum value is 2048.
    PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

The read search request.

func (*SearchReadsRequest) Descriptor Uses

func (*SearchReadsRequest) Descriptor() ([]byte, []int)

Deprecated: Use SearchReadsRequest.ProtoReflect.Descriptor instead.

func (*SearchReadsRequest) GetEnd Uses

func (x *SearchReadsRequest) GetEnd() int64

func (*SearchReadsRequest) GetPageSize Uses

func (x *SearchReadsRequest) GetPageSize() int32

func (*SearchReadsRequest) GetPageToken Uses

func (x *SearchReadsRequest) GetPageToken() string

func (*SearchReadsRequest) GetReadGroupIds Uses

func (x *SearchReadsRequest) GetReadGroupIds() []string

func (*SearchReadsRequest) GetReadGroupSetIds Uses

func (x *SearchReadsRequest) GetReadGroupSetIds() []string

func (*SearchReadsRequest) GetReferenceName Uses

func (x *SearchReadsRequest) GetReferenceName() string

func (*SearchReadsRequest) GetStart Uses

func (x *SearchReadsRequest) GetStart() int64

func (*SearchReadsRequest) ProtoMessage Uses

func (*SearchReadsRequest) ProtoMessage()

func (*SearchReadsRequest) ProtoReflect Uses

func (x *SearchReadsRequest) ProtoReflect() protoreflect.Message

func (*SearchReadsRequest) Reset Uses

func (x *SearchReadsRequest) Reset()

func (*SearchReadsRequest) String Uses

func (x *SearchReadsRequest) String() string

type SearchReadsResponse Uses

type SearchReadsResponse struct {

    // The list of matching alignments sorted by mapped genomic coordinate,
    // if any, ascending in position within the same reference. Unmapped reads,
    // which have no position, are returned contiguously and are sorted in
    // ascending lexicographic order by fragment name.
    Alignments []*Read `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

The read search response.

func (*SearchReadsResponse) Descriptor Uses

func (*SearchReadsResponse) Descriptor() ([]byte, []int)

Deprecated: Use SearchReadsResponse.ProtoReflect.Descriptor instead.

func (*SearchReadsResponse) GetAlignments Uses

func (x *SearchReadsResponse) GetAlignments() []*Read

func (*SearchReadsResponse) GetNextPageToken Uses

func (x *SearchReadsResponse) GetNextPageToken() string

func (*SearchReadsResponse) ProtoMessage Uses

func (*SearchReadsResponse) ProtoMessage()

func (*SearchReadsResponse) ProtoReflect Uses

func (x *SearchReadsResponse) ProtoReflect() protoreflect.Message

func (*SearchReadsResponse) Reset Uses

func (x *SearchReadsResponse) Reset()

func (*SearchReadsResponse) String Uses

func (x *SearchReadsResponse) String() string

type SearchReferenceSetsRequest Uses

type SearchReferenceSetsRequest struct {

    // If present, return reference sets for which the
    // [md5checksum][google.genomics.v1.ReferenceSet.md5checksum] matches exactly.
    Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"`
    // If present, return reference sets for which a prefix of any of
    // [sourceAccessions][google.genomics.v1.ReferenceSet.source_accessions]
    // match any of these strings. Accession numbers typically have a main number
    // and a version, for example `NC_000001.11`.
    Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"`
    // If present, return reference sets for which a substring of their
    // `assemblyId` matches this string (case insensitive).
    AssemblyId string `protobuf:"bytes,3,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 1024. The maximum value is 4096.
    PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

func (*SearchReferenceSetsRequest) Descriptor Uses

func (*SearchReferenceSetsRequest) Descriptor() ([]byte, []int)

Deprecated: Use SearchReferenceSetsRequest.ProtoReflect.Descriptor instead.

func (*SearchReferenceSetsRequest) GetAccessions Uses

func (x *SearchReferenceSetsRequest) GetAccessions() []string

func (*SearchReferenceSetsRequest) GetAssemblyId Uses

func (x *SearchReferenceSetsRequest) GetAssemblyId() string

func (*SearchReferenceSetsRequest) GetMd5Checksums Uses

func (x *SearchReferenceSetsRequest) GetMd5Checksums() []string

func (*SearchReferenceSetsRequest) GetPageSize Uses

func (x *SearchReferenceSetsRequest) GetPageSize() int32

func (*SearchReferenceSetsRequest) GetPageToken Uses

func (x *SearchReferenceSetsRequest) GetPageToken() string

func (*SearchReferenceSetsRequest) ProtoMessage Uses

func (*SearchReferenceSetsRequest) ProtoMessage()

func (*SearchReferenceSetsRequest) ProtoReflect Uses

func (x *SearchReferenceSetsRequest) ProtoReflect() protoreflect.Message

func (*SearchReferenceSetsRequest) Reset Uses

func (x *SearchReferenceSetsRequest) Reset()

func (*SearchReferenceSetsRequest) String Uses

func (x *SearchReferenceSetsRequest) String() string

type SearchReferenceSetsResponse Uses

type SearchReferenceSetsResponse struct {

    // The matching references sets.
    ReferenceSets []*ReferenceSet `protobuf:"bytes,1,rep,name=reference_sets,json=referenceSets,proto3" json:"reference_sets,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

func (*SearchReferenceSetsResponse) Descriptor Uses

func (*SearchReferenceSetsResponse) Descriptor() ([]byte, []int)

Deprecated: Use SearchReferenceSetsResponse.ProtoReflect.Descriptor instead.

func (*SearchReferenceSetsResponse) GetNextPageToken Uses

func (x *SearchReferenceSetsResponse) GetNextPageToken() string

func (*SearchReferenceSetsResponse) GetReferenceSets Uses

func (x *SearchReferenceSetsResponse) GetReferenceSets() []*ReferenceSet

func (*SearchReferenceSetsResponse) ProtoMessage Uses

func (*SearchReferenceSetsResponse) ProtoMessage()

func (*SearchReferenceSetsResponse) ProtoReflect Uses

func (x *SearchReferenceSetsResponse) ProtoReflect() protoreflect.Message

func (*SearchReferenceSetsResponse) Reset Uses

func (x *SearchReferenceSetsResponse) Reset()

func (*SearchReferenceSetsResponse) String Uses

func (x *SearchReferenceSetsResponse) String() string

type SearchReferencesRequest Uses

type SearchReferencesRequest struct {

    // If present, return references for which the
    // [md5checksum][google.genomics.v1.Reference.md5checksum] matches exactly.
    Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"`
    // If present, return references for which a prefix of any of
    // [sourceAccessions][google.genomics.v1.Reference.source_accessions] match
    // any of these strings. Accession numbers typically have a main number and a
    // version, for example `GCF_000001405.26`.
    Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"`
    // If present, return only references which belong to this reference set.
    ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 1024. The maximum value is 4096.
    PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

func (*SearchReferencesRequest) Descriptor Uses

func (*SearchReferencesRequest) Descriptor() ([]byte, []int)

Deprecated: Use SearchReferencesRequest.ProtoReflect.Descriptor instead.

func (*SearchReferencesRequest) GetAccessions Uses

func (x *SearchReferencesRequest) GetAccessions() []string

func (*SearchReferencesRequest) GetMd5Checksums Uses

func (x *SearchReferencesRequest) GetMd5Checksums() []string

func (*SearchReferencesRequest) GetPageSize Uses

func (x *SearchReferencesRequest) GetPageSize() int32

func (*SearchReferencesRequest) GetPageToken Uses

func (x *SearchReferencesRequest) GetPageToken() string

func (*SearchReferencesRequest) GetReferenceSetId Uses

func (x *SearchReferencesRequest) GetReferenceSetId() string

func (*SearchReferencesRequest) ProtoMessage Uses

func (*SearchReferencesRequest) ProtoMessage()

func (*SearchReferencesRequest) ProtoReflect Uses

func (x *SearchReferencesRequest) ProtoReflect() protoreflect.Message

func (*SearchReferencesRequest) Reset Uses

func (x *SearchReferencesRequest) Reset()

func (*SearchReferencesRequest) String Uses

func (x *SearchReferencesRequest) String() string

type SearchReferencesResponse Uses

type SearchReferencesResponse struct {

    // The matching references.
    References []*Reference `protobuf:"bytes,1,rep,name=references,proto3" json:"references,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

func (*SearchReferencesResponse) Descriptor Uses

func (*SearchReferencesResponse) Descriptor() ([]byte, []int)

Deprecated: Use SearchReferencesResponse.ProtoReflect.Descriptor instead.

func (*SearchReferencesResponse) GetNextPageToken Uses

func (x *SearchReferencesResponse) GetNextPageToken() string

func (*SearchReferencesResponse) GetReferences Uses

func (x *SearchReferencesResponse) GetReferences() []*Reference

func (*SearchReferencesResponse) ProtoMessage Uses

func (*SearchReferencesResponse) ProtoMessage()

func (*SearchReferencesResponse) ProtoReflect Uses

func (x *SearchReferencesResponse) ProtoReflect() protoreflect.Message

func (*SearchReferencesResponse) Reset Uses

func (x *SearchReferencesResponse) Reset()

func (*SearchReferencesResponse) String Uses

func (x *SearchReferencesResponse) String() string

type SearchVariantSetsRequest Uses

type SearchVariantSetsRequest struct {

    // Exactly one dataset ID must be provided here. Only variant sets which
    // belong to this dataset will be returned.
    DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,2,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 1024.
    PageSize int32 `protobuf:"varint,3,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

The search variant sets request.

func (*SearchVariantSetsRequest) Descriptor Uses

func (*SearchVariantSetsRequest) Descriptor() ([]byte, []int)

Deprecated: Use SearchVariantSetsRequest.ProtoReflect.Descriptor instead.

func (*SearchVariantSetsRequest) GetDatasetIds Uses

func (x *SearchVariantSetsRequest) GetDatasetIds() []string

func (*SearchVariantSetsRequest) GetPageSize Uses

func (x *SearchVariantSetsRequest) GetPageSize() int32

func (*SearchVariantSetsRequest) GetPageToken Uses

func (x *SearchVariantSetsRequest) GetPageToken() string

func (*SearchVariantSetsRequest) ProtoMessage Uses

func (*SearchVariantSetsRequest) ProtoMessage()

func (*SearchVariantSetsRequest) ProtoReflect Uses

func (x *SearchVariantSetsRequest) ProtoReflect() protoreflect.Message

func (*SearchVariantSetsRequest) Reset Uses

func (x *SearchVariantSetsRequest) Reset()

func (*SearchVariantSetsRequest) String Uses

func (x *SearchVariantSetsRequest) String() string

type SearchVariantSetsResponse Uses

type SearchVariantSetsResponse struct {

    // The variant sets belonging to the requested dataset.
    VariantSets []*VariantSet `protobuf:"bytes,1,rep,name=variant_sets,json=variantSets,proto3" json:"variant_sets,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

The search variant sets response.

func (*SearchVariantSetsResponse) Descriptor Uses

func (*SearchVariantSetsResponse) Descriptor() ([]byte, []int)

Deprecated: Use SearchVariantSetsResponse.ProtoReflect.Descriptor instead.

func (*SearchVariantSetsResponse) GetNextPageToken Uses

func (x *SearchVariantSetsResponse) GetNextPageToken() string

func (*SearchVariantSetsResponse) GetVariantSets Uses

func (x *SearchVariantSetsResponse) GetVariantSets() []*VariantSet

func (*SearchVariantSetsResponse) ProtoMessage Uses

func (*SearchVariantSetsResponse) ProtoMessage()

func (*SearchVariantSetsResponse) ProtoReflect Uses

func (x *SearchVariantSetsResponse) ProtoReflect() protoreflect.Message

func (*SearchVariantSetsResponse) Reset Uses

func (x *SearchVariantSetsResponse) Reset()

func (*SearchVariantSetsResponse) String Uses

func (x *SearchVariantSetsResponse) String() string

type SearchVariantsRequest Uses

type SearchVariantsRequest struct {

    // At most one variant set ID must be provided. Only variants from this
    // variant set will be returned. If omitted, a call set id must be included in
    // the request.
    VariantSetIds []string `protobuf:"bytes,1,rep,name=variant_set_ids,json=variantSetIds,proto3" json:"variant_set_ids,omitempty"`
    // Only return variants which have exactly this name.
    VariantName string `protobuf:"bytes,2,opt,name=variant_name,json=variantName,proto3" json:"variant_name,omitempty"`
    // Only return variant calls which belong to call sets with these ids.
    // Leaving this blank returns all variant calls. If a variant has no
    // calls belonging to any of these call sets, it won't be returned at all.
    CallSetIds []string `protobuf:"bytes,3,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
    // Required. Only return variants in this reference sequence.
    ReferenceName string `protobuf:"bytes,4,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The beginning of the window (0-based, inclusive) for which
    // overlapping variants should be returned. If unspecified, defaults to 0.
    Start int64 `protobuf:"varint,5,opt,name=start,proto3" json:"start,omitempty"`
    // The end of the window, 0-based exclusive. If unspecified or 0, defaults to
    // the length of the reference.
    End int64 `protobuf:"varint,6,opt,name=end,proto3" json:"end,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of variants to return in a single page. If unspecified,
    // defaults to 5000. The maximum value is 10000.
    PageSize int32 `protobuf:"varint,8,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // The maximum number of calls to return in a single page. Note that this
    // limit may be exceeded in the event that a matching variant contains more
    // calls than the requested maximum. If unspecified, defaults to 5000. The
    // maximum value is 10000.
    MaxCalls int32 `protobuf:"varint,9,opt,name=max_calls,json=maxCalls,proto3" json:"max_calls,omitempty"`
    // contains filtered or unexported fields
}

The variant search request.

func (*SearchVariantsRequest) Descriptor Uses

func (*SearchVariantsRequest) Descriptor() ([]byte, []int)

Deprecated: Use SearchVariantsRequest.ProtoReflect.Descriptor instead.

func (*SearchVariantsRequest) GetCallSetIds Uses

func (x *SearchVariantsRequest) GetCallSetIds() []string

func (*SearchVariantsRequest) GetEnd Uses

func (x *SearchVariantsRequest) GetEnd() int64

func (*SearchVariantsRequest) GetMaxCalls Uses

func (x *SearchVariantsRequest) GetMaxCalls() int32

func (*SearchVariantsRequest) GetPageSize Uses

func (x *SearchVariantsRequest) GetPageSize() int32

func (*SearchVariantsRequest) GetPageToken Uses

func (x *SearchVariantsRequest) GetPageToken() string

func (*SearchVariantsRequest) GetReferenceName Uses

func (x *SearchVariantsRequest) GetReferenceName() string

func (*SearchVariantsRequest) GetStart Uses

func (x *SearchVariantsRequest) GetStart() int64

func (*SearchVariantsRequest) GetVariantName Uses

func (x *SearchVariantsRequest) GetVariantName() string

func (*SearchVariantsRequest) GetVariantSetIds Uses

func (x *SearchVariantsRequest) GetVariantSetIds() []string

func (*SearchVariantsRequest) ProtoMessage Uses

func (*SearchVariantsRequest) ProtoMessage()

func (*SearchVariantsRequest) ProtoReflect Uses

func (x *SearchVariantsRequest) ProtoReflect() protoreflect.Message

func (*SearchVariantsRequest) Reset Uses

func (x *SearchVariantsRequest) Reset()

func (*SearchVariantsRequest) String Uses

func (x *SearchVariantsRequest) String() string

type SearchVariantsResponse Uses

type SearchVariantsResponse struct {

    // The list of matching Variants.
    Variants []*Variant `protobuf:"bytes,1,rep,name=variants,proto3" json:"variants,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

The variant search response.

func (*SearchVariantsResponse) Descriptor Uses

func (*SearchVariantsResponse) Descriptor() ([]byte, []int)

Deprecated: Use SearchVariantsResponse.ProtoReflect.Descriptor instead.

func (*SearchVariantsResponse) GetNextPageToken Uses

func (x *SearchVariantsResponse) GetNextPageToken() string

func (*SearchVariantsResponse) GetVariants Uses

func (x *SearchVariantsResponse) GetVariants() []*Variant

func (*SearchVariantsResponse) ProtoMessage Uses

func (*SearchVariantsResponse) ProtoMessage()

func (*SearchVariantsResponse) ProtoReflect Uses

func (x *SearchVariantsResponse) ProtoReflect() protoreflect.Message

func (*SearchVariantsResponse) Reset Uses

func (x *SearchVariantsResponse) Reset()

func (*SearchVariantsResponse) String Uses

func (x *SearchVariantsResponse) String() string

type StreamReadsRequest Uses

type StreamReadsRequest struct {

    // The Google Cloud project ID which will be billed
    // for this access. The caller must have WRITE access to this project.
    // Required.
    ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // The ID of the read group set from which to stream reads.
    ReadGroupSetId string `protobuf:"bytes,2,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // The reference sequence name, for example `chr1`,
    // `1`, or `chrX`. If set to *, only unmapped reads are
    // returned.
    ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The start position of the range on the reference, 0-based inclusive. If
    // specified, `referenceName` must also be specified.
    Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
    // The end position of the range on the reference, 0-based exclusive. If
    // specified, `referenceName` must also be specified.
    End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
    // Restricts results to a shard containing approximately `1/totalShards`
    // of the normal response payload for this query. Results from a sharded
    // request are disjoint from those returned by all queries which differ only
    // in their shard parameter. A shard may yield 0 results; this is especially
    // likely for large values of `totalShards`.
    //
    // Valid values are `[0, totalShards)`.
    Shard int32 `protobuf:"varint,6,opt,name=shard,proto3" json:"shard,omitempty"`
    // Specifying `totalShards` causes a disjoint subset of the normal response
    // payload to be returned for each query with a unique `shard` parameter
    // specified. A best effort is made to yield equally sized shards. Sharding
    // can be used to distribute processing amongst workers, where each worker is
    // assigned a unique `shard` number and all workers specify the same
    // `totalShards` number. The union of reads returned for all sharded queries
    // `[0, totalShards)` is equal to those returned by a single unsharded query.
    //
    // Queries for different values of `totalShards` with common divisors will
    // share shard boundaries. For example, streaming `shard` 2 of 5
    // `totalShards` yields the same results as streaming `shard`s 4 and 5 of 10
    // `totalShards`. This property can be leveraged for adaptive retries.
    TotalShards int32 `protobuf:"varint,7,opt,name=total_shards,json=totalShards,proto3" json:"total_shards,omitempty"`
    // contains filtered or unexported fields
}

The stream reads request.

func (*StreamReadsRequest) Descriptor Uses

func (*StreamReadsRequest) Descriptor() ([]byte, []int)

Deprecated: Use StreamReadsRequest.ProtoReflect.Descriptor instead.

func (*StreamReadsRequest) GetEnd Uses

func (x *StreamReadsRequest) GetEnd() int64

func (*StreamReadsRequest) GetProjectId Uses

func (x *StreamReadsRequest) GetProjectId() string

func (*StreamReadsRequest) GetReadGroupSetId Uses

func (x *StreamReadsRequest) GetReadGroupSetId() string

func (*StreamReadsRequest) GetReferenceName Uses

func (x *StreamReadsRequest) GetReferenceName() string

func (*StreamReadsRequest) GetShard Uses

func (x *StreamReadsRequest) GetShard() int32

func (*StreamReadsRequest) GetStart Uses

func (x *StreamReadsRequest) GetStart() int64

func (*StreamReadsRequest) GetTotalShards Uses