var (
    AnnotationType_name = map[int32]string{
        0:  "ANNOTATION_TYPE_UNSPECIFIED",
        1:  "GENERIC",
        2:  "VARIANT",
        3:  "GENE",
        4:  "TRANSCRIPT",
    }
    AnnotationType_value = map[string]int32{
        "ANNOTATION_TYPE_UNSPECIFIED": 0,
        "GENERIC":                     1,
        "VARIANT":                     2,
        "GENE":                        3,
        "TRANSCRIPT":                  4,
    }
)

var (
    VariantAnnotation_Type_name = map[int32]string{
        0:  "TYPE_UNSPECIFIED",
        1:  "TYPE_OTHER",
        2:  "INSERTION",
        3:  "DELETION",
        4:  "SUBSTITUTION",
        5:  "SNP",
        6:  "STRUCTURAL",
        7:  "CNV",
    }
    VariantAnnotation_Type_value = map[string]int32{
        "TYPE_UNSPECIFIED": 0,
        "TYPE_OTHER":       1,
        "INSERTION":        2,
        "DELETION":         3,
        "SUBSTITUTION":     4,
        "SNP":              5,
        "STRUCTURAL":       6,
        "CNV":              7,
    }
)

var (
    VariantAnnotation_Effect_name = map[int32]string{
        0:  "EFFECT_UNSPECIFIED",
        1:  "EFFECT_OTHER",
        2:  "FRAMESHIFT",
        3:  "FRAME_PRESERVING_INDEL",
        4:  "SYNONYMOUS_SNP",
        5:  "NONSYNONYMOUS_SNP",
        6:  "STOP_GAIN",
        7:  "STOP_LOSS",
        8:  "SPLICE_SITE_DISRUPTION",
    }
    VariantAnnotation_Effect_value = map[string]int32{
        "EFFECT_UNSPECIFIED":     0,
        "EFFECT_OTHER":           1,
        "FRAMESHIFT":             2,
        "FRAME_PRESERVING_INDEL": 3,
        "SYNONYMOUS_SNP":         4,
        "NONSYNONYMOUS_SNP":      5,
        "STOP_GAIN":              6,
        "STOP_LOSS":              7,
        "SPLICE_SITE_DISRUPTION": 8,
    }
)

var (
    VariantAnnotation_ClinicalSignificance_name = map[int32]string{
        0:  "CLINICAL_SIGNIFICANCE_UNSPECIFIED",
        1:  "CLINICAL_SIGNIFICANCE_OTHER",
        2:  "UNCERTAIN",
        3:  "BENIGN",
        4:  "LIKELY_BENIGN",
        5:  "LIKELY_PATHOGENIC",
        6:  "PATHOGENIC",
        7:  "DRUG_RESPONSE",
        8:  "HISTOCOMPATIBILITY",
        9:  "CONFERS_SENSITIVITY",
        10: "RISK_FACTOR",
        11: "ASSOCIATION",
        12: "PROTECTIVE",
        13: "MULTIPLE_REPORTED",
    }
    VariantAnnotation_ClinicalSignificance_value = map[string]int32{
        "CLINICAL_SIGNIFICANCE_UNSPECIFIED": 0,
        "CLINICAL_SIGNIFICANCE_OTHER":       1,
        "UNCERTAIN":                         2,
        "BENIGN":                            3,
        "LIKELY_BENIGN":                     4,
        "LIKELY_PATHOGENIC":                 5,
        "PATHOGENIC":                        6,
        "DRUG_RESPONSE":                     7,
        "HISTOCOMPATIBILITY":                8,
        "CONFERS_SENSITIVITY":               9,
        "RISK_FACTOR":                       10,
        "ASSOCIATION":                       11,
        "PROTECTIVE":                        12,
        "MULTIPLE_REPORTED":                 13,
    }
)

var (
    CigarUnit_Operation_name = map[int32]string{
        0:  "OPERATION_UNSPECIFIED",
        1:  "ALIGNMENT_MATCH",
        2:  "INSERT",
        3:  "DELETE",
        4:  "SKIP",
        5:  "CLIP_SOFT",
        6:  "CLIP_HARD",
        7:  "PAD",
        8:  "SEQUENCE_MATCH",
        9:  "SEQUENCE_MISMATCH",
    }
    CigarUnit_Operation_value = map[string]int32{
        "OPERATION_UNSPECIFIED": 0,
        "ALIGNMENT_MATCH":       1,
        "INSERT":                2,
        "DELETE":                3,
        "SKIP":                  4,
        "CLIP_SOFT":             5,
        "CLIP_HARD":             6,
        "PAD":                   7,
        "SEQUENCE_MATCH":        8,
        "SEQUENCE_MISMATCH":     9,
    }
)

var (
    ImportReadGroupSetsRequest_PartitionStrategy_name = map[int32]string{
        0:  "PARTITION_STRATEGY_UNSPECIFIED",
        1:  "PER_FILE_PER_SAMPLE",
        2:  "MERGE_ALL",
    }
    ImportReadGroupSetsRequest_PartitionStrategy_value = map[string]int32{
        "PARTITION_STRATEGY_UNSPECIFIED": 0,
        "PER_FILE_PER_SAMPLE":            1,
        "MERGE_ALL":                      2,
    }
)

var (
    InfoMergeOperation_name = map[int32]string{
        0:  "INFO_MERGE_OPERATION_UNSPECIFIED",
        1:  "IGNORE_NEW",
        2:  "MOVE_TO_CALLS",
    }
    InfoMergeOperation_value = map[string]int32{
        "INFO_MERGE_OPERATION_UNSPECIFIED": 0,
        "IGNORE_NEW":                       1,
        "MOVE_TO_CALLS":                    2,
    }
)

var (
    VariantSetMetadata_Type_name = map[int32]string{
        0:  "TYPE_UNSPECIFIED",
        1:  "INTEGER",
        2:  "FLOAT",
        3:  "FLAG",
        4:  "CHARACTER",
        5:  "STRING",
    }
    VariantSetMetadata_Type_value = map[string]int32{
        "TYPE_UNSPECIFIED": 0,
        "INTEGER":          1,
        "FLOAT":            2,
        "FLAG":             3,
        "CHARACTER":        4,
        "STRING":           5,
    }
)

var (
    ImportVariantsRequest_Format_name = map[int32]string{
        0:  "FORMAT_UNSPECIFIED",
        1:  "FORMAT_VCF",
        2:  "FORMAT_COMPLETE_GENOMICS",
    }
    ImportVariantsRequest_Format_value = map[string]int32{
        "FORMAT_UNSPECIFIED":       0,
        "FORMAT_VCF":               1,
        "FORMAT_COMPLETE_GENOMICS": 2,
    }
)

var (
    ExportVariantSetRequest_Format_name = map[int32]string{
        0:  "FORMAT_UNSPECIFIED",
        1:  "FORMAT_BIGQUERY",
    }
    ExportVariantSetRequest_Format_value = map[string]int32{
        "FORMAT_UNSPECIFIED": 0,
        "FORMAT_BIGQUERY":    1,
    }
)

var File_google_genomics_v1_annotations_proto protoreflect.FileDescriptor

var File_google_genomics_v1_cigar_proto protoreflect.FileDescriptor

var File_google_genomics_v1_datasets_proto protoreflect.FileDescriptor

var File_google_genomics_v1_operations_proto protoreflect.FileDescriptor

var File_google_genomics_v1_position_proto protoreflect.FileDescriptor

var File_google_genomics_v1_range_proto protoreflect.FileDescriptor

var File_google_genomics_v1_readalignment_proto protoreflect.FileDescriptor

var File_google_genomics_v1_readgroup_proto protoreflect.FileDescriptor

var File_google_genomics_v1_readgroupset_proto protoreflect.FileDescriptor

var File_google_genomics_v1_reads_proto protoreflect.FileDescriptor

var File_google_genomics_v1_references_proto protoreflect.FileDescriptor

var File_google_genomics_v1_variants_proto protoreflect.FileDescriptor

type Annotation struct {

    // The server-generated annotation ID, unique across all annotations.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The annotation set to which this annotation belongs.
    AnnotationSetId string `protobuf:"bytes,2,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
    // The display name of this annotation.
    Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
    // The ID of the Google Genomics reference associated with this range.
    ReferenceId string `protobuf:"bytes,4,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
    // The display name corresponding to the reference specified by
    // `referenceId`, for example `chr1`, `1`, or `chrX`.
    ReferenceName string `protobuf:"bytes,5,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The start position of the range on the reference, 0-based inclusive.
    Start int64 `protobuf:"varint,6,opt,name=start,proto3" json:"start,omitempty"`
    // The end position of the range on the reference, 0-based exclusive.
    End int64 `protobuf:"varint,7,opt,name=end,proto3" json:"end,omitempty"`
    // Whether this range refers to the reverse strand, as opposed to the forward
    // strand. Note that regardless of this field, the start/end position of the
    // range always refer to the forward strand.
    ReverseStrand bool `protobuf:"varint,8,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
    // The data type for this annotation. Must match the containing annotation
    // set's type.
    Type AnnotationType `protobuf:"varint,9,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
    // Types that are assignable to Value:
    //	*Annotation_Variant
    //	*Annotation_Transcript
    Value isAnnotation_Value `protobuf_oneof:"value"`
    // A map of additional read alignment information. This must be of the form
    // map<string, string[]> (string key mapping to a list of string values).
    Info map[string]*structpb.ListValue `protobuf:"bytes,12,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

type AnnotationServiceV1Client interface {
    // Creates a new annotation set. Caller must have WRITE permission for the
    // associated dataset.
    //
    // The following fields are required:
    //
    //   * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
    //   * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
    //
    // All other fields may be optionally specified, unless documented as being
    // server-generated (for example, the `id` field).
    CreateAnnotationSet(ctx context.Context, in *CreateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
    // Gets an annotation set. Caller must have READ permission for
    // the associated dataset.
    GetAnnotationSet(ctx context.Context, in *GetAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
    // Updates an annotation set. The update must respect all mutability
    // restrictions and other invariants described on the annotation set resource.
    // Caller must have WRITE permission for the associated dataset.
    UpdateAnnotationSet(ctx context.Context, in *UpdateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
    // Deletes an annotation set. Caller must have WRITE permission
    // for the associated annotation set.
    DeleteAnnotationSet(ctx context.Context, in *DeleteAnnotationSetRequest, opts ...grpc.CallOption) (*emptypb.Empty, error)
    // Searches for annotation sets that match the given criteria. Annotation sets
    // are returned in an unspecified order. This order is consistent, such that
    // two queries for the same content (regardless of page size) yield annotation
    // sets in the same order across their respective streams of paginated
    // responses. Caller must have READ permission for the queried datasets.
    SearchAnnotationSets(ctx context.Context, in *SearchAnnotationSetsRequest, opts ...grpc.CallOption) (*SearchAnnotationSetsResponse, error)
    // Creates a new annotation. Caller must have WRITE permission
    // for the associated annotation set.
    //
    // The following fields are required:
    //
    // * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
    // * [referenceName][google.genomics.v1.Annotation.reference_name] or
    //   [referenceId][google.genomics.v1.Annotation.reference_id]
    //
    // ### Transcripts
    //
    // For annotations of type TRANSCRIPT, the following fields of
    // [transcript][google.genomics.v1.Annotation.transcript] must be provided:
    //
    // * [exons.start][google.genomics.v1.Transcript.Exon.start]
    // * [exons.end][google.genomics.v1.Transcript.Exon.end]
    //
    // All other fields may be optionally specified, unless documented as being
    // server-generated (for example, the `id` field). The annotated
    // range must be no longer than 100Mbp (mega base pairs). See the
    // [Annotation resource][google.genomics.v1.Annotation]
    // for additional restrictions on each field.
    CreateAnnotation(ctx context.Context, in *CreateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
    // Creates one or more new annotations atomically. All annotations must
    // belong to the same annotation set. Caller must have WRITE
    // permission for this annotation set. For optimal performance, batch
    // positionally adjacent annotations together.
    //
    // If the request has a systemic issue, such as an attempt to write to
    // an inaccessible annotation set, the entire RPC will fail accordingly. For
    // lesser data issues, when possible an error will be isolated to the
    // corresponding batch entry in the response; the remaining well formed
    // annotations will be created normally.
    //
    // For details on the requirements for each individual annotation resource,
    // see
    // [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
    BatchCreateAnnotations(ctx context.Context, in *BatchCreateAnnotationsRequest, opts ...grpc.CallOption) (*BatchCreateAnnotationsResponse, error)
    // Gets an annotation. Caller must have READ permission
    // for the associated annotation set.
    GetAnnotation(ctx context.Context, in *GetAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
    // Updates an annotation. Caller must have
    // WRITE permission for the associated dataset.
    UpdateAnnotation(ctx context.Context, in *UpdateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
    // Deletes an annotation. Caller must have WRITE permission for
    // the associated annotation set.
    DeleteAnnotation(ctx context.Context, in *DeleteAnnotationRequest, opts ...grpc.CallOption) (*emptypb.Empty, error)
    // Searches for annotations that match the given criteria. Results are
    // ordered by genomic coordinate (by reference sequence, then position).
    // Annotations with equivalent genomic coordinates are returned in an
    // unspecified order. This order is consistent, such that two queries for the
    // same content (regardless of page size) yield annotations in the same order
    // across their respective streams of paginated responses. Caller must have
    // READ permission for the queried annotation sets.
    SearchAnnotations(ctx context.Context, in *SearchAnnotationsRequest, opts ...grpc.CallOption) (*SearchAnnotationsResponse, error)
}

type AnnotationServiceV1Server interface {
    // Creates a new annotation set. Caller must have WRITE permission for the
    // associated dataset.
    //
    // The following fields are required:
    //
    //   * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
    //   * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
    //
    // All other fields may be optionally specified, unless documented as being
    // server-generated (for example, the `id` field).
    CreateAnnotationSet(context.Context, *CreateAnnotationSetRequest) (*AnnotationSet, error)
    // Gets an annotation set. Caller must have READ permission for
    // the associated dataset.
    GetAnnotationSet(context.Context, *GetAnnotationSetRequest) (*AnnotationSet, error)
    // Updates an annotation set. The update must respect all mutability
    // restrictions and other invariants described on the annotation set resource.
    // Caller must have WRITE permission for the associated dataset.
    UpdateAnnotationSet(context.Context, *UpdateAnnotationSetRequest) (*AnnotationSet, error)
    // Deletes an annotation set. Caller must have WRITE permission
    // for the associated annotation set.
    DeleteAnnotationSet(context.Context, *DeleteAnnotationSetRequest) (*emptypb.Empty, error)
    // Searches for annotation sets that match the given criteria. Annotation sets
    // are returned in an unspecified order. This order is consistent, such that
    // two queries for the same content (regardless of page size) yield annotation
    // sets in the same order across their respective streams of paginated
    // responses. Caller must have READ permission for the queried datasets.
    SearchAnnotationSets(context.Context, *SearchAnnotationSetsRequest) (*SearchAnnotationSetsResponse, error)
    // Creates a new annotation. Caller must have WRITE permission
    // for the associated annotation set.
    //
    // The following fields are required:
    //
    // * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
    // * [referenceName][google.genomics.v1.Annotation.reference_name] or
    //   [referenceId][google.genomics.v1.Annotation.reference_id]
    //
    // ### Transcripts
    //
    // For annotations of type TRANSCRIPT, the following fields of
    // [transcript][google.genomics.v1.Annotation.transcript] must be provided:
    //
    // * [exons.start][google.genomics.v1.Transcript.Exon.start]
    // * [exons.end][google.genomics.v1.Transcript.Exon.end]
    //
    // All other fields may be optionally specified, unless documented as being
    // server-generated (for example, the `id` field). The annotated
    // range must be no longer than 100Mbp (mega base pairs). See the
    // [Annotation resource][google.genomics.v1.Annotation]
    // for additional restrictions on each field.
    CreateAnnotation(context.Context, *CreateAnnotationRequest) (*Annotation, error)
    // Creates one or more new annotations atomically. All annotations must
    // belong to the same annotation set. Caller must have WRITE
    // permission for this annotation set. For optimal performance, batch
    // positionally adjacent annotations together.
    //
    // If the request has a systemic issue, such as an attempt to write to
    // an inaccessible annotation set, the entire RPC will fail accordingly. For
    // lesser data issues, when possible an error will be isolated to the
    // corresponding batch entry in the response; the remaining well formed
    // annotations will be created normally.
    //
    // For details on the requirements for each individual annotation resource,
    // see
    // [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
    BatchCreateAnnotations(context.Context, *BatchCreateAnnotationsRequest) (*BatchCreateAnnotationsResponse, error)
    // Gets an annotation. Caller must have READ permission
    // for the associated annotation set.
    GetAnnotation(context.Context, *GetAnnotationRequest) (*Annotation, error)
    // Updates an annotation. Caller must have
    // WRITE permission for the associated dataset.
    UpdateAnnotation(context.Context, *UpdateAnnotationRequest) (*Annotation, error)
    // Deletes an annotation. Caller must have WRITE permission for
    // the associated annotation set.
    DeleteAnnotation(context.Context, *DeleteAnnotationRequest) (*emptypb.Empty, error)
    // Searches for annotations that match the given criteria. Results are
    // ordered by genomic coordinate (by reference sequence, then position).
    // Annotations with equivalent genomic coordinates are returned in an
    // unspecified order. This order is consistent, such that two queries for the
    // same content (regardless of page size) yield annotations in the same order
    // across their respective streams of paginated responses. Caller must have
    // READ permission for the queried annotation sets.
    SearchAnnotations(context.Context, *SearchAnnotationsRequest) (*SearchAnnotationsResponse, error)
}

type AnnotationSet struct {

    // The server-generated annotation set ID, unique across all annotation sets.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The dataset to which this annotation set belongs.
    DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    // The ID of the reference set that defines the coordinate space for this
    // set's annotations.
    ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    // The display name for this annotation set.
    Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
    // The source URI describing the file from which this annotation set was
    // generated, if any.
    SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
    // The type of annotations contained within this set.
    Type AnnotationType `protobuf:"varint,6,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
    // A map of additional read alignment information. This must be of the form
    // map<string, string[]> (string key mapping to a list of string values).
    Info map[string]*structpb.ListValue `protobuf:"bytes,17,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

type AnnotationType int32

const (
    AnnotationType_ANNOTATION_TYPE_UNSPECIFIED AnnotationType = 0
    // A `GENERIC` annotation type should be used when no other annotation
    // type will suffice. This represents an untyped annotation of the reference
    // genome.
    AnnotationType_GENERIC AnnotationType = 1
    // A `VARIANT` annotation type.
    AnnotationType_VARIANT AnnotationType = 2
    // A `GENE` annotation type represents the existence of a gene at the
    // associated reference coordinates. The start coordinate is typically the
    // gene's transcription start site and the end is typically the end of the
    // gene's last exon.
    AnnotationType_GENE AnnotationType = 3
    // A `TRANSCRIPT` annotation type represents the assertion that a
    // particular region of the reference genome may be transcribed as RNA.
    AnnotationType_TRANSCRIPT AnnotationType = 4
)

type Annotation_Transcript struct {
    // A transcript value represents the assertion that a particular region of
    // the reference genome may be transcribed as RNA. An alternative splicing
    // pattern would be represented as a separate transcript object. This field
    // is only set for annotations of type `TRANSCRIPT`.
    Transcript *Transcript `protobuf:"bytes,11,opt,name=transcript,proto3,oneof"`
}

type Annotation_Variant struct {
    // A variant annotation, which describes the effect of a variant on the
    // genome, the coding sequence, and/or higher level consequences at the
    // organism level e.g. pathogenicity. This field is only set for annotations
    // of type `VARIANT`.
    Variant *VariantAnnotation `protobuf:"bytes,10,opt,name=variant,proto3,oneof"`
}

type BatchCreateAnnotationsRequest struct {

    // The annotations to be created. At most 4096 can be specified in a single
    // request.
    Annotations []*Annotation `protobuf:"bytes,1,rep,name=annotations,proto3" json:"annotations,omitempty"`
    // A unique request ID which enables the server to detect duplicated requests.
    // If provided, duplicated requests will result in the same response; if not
    // provided, duplicated requests may result in duplicated data. For a given
    // annotation set, callers should not reuse `request_id`s when writing
    // different batches of annotations - behavior in this case is undefined.
    // A common approach is to use a UUID. For batch jobs where worker crashes are
    // a possibility, consider using some unique variant of a worker or run ID.
    RequestId string `protobuf:"bytes,2,opt,name=request_id,json=requestId,proto3" json:"request_id,omitempty"`
    // contains filtered or unexported fields
}

type BatchCreateAnnotationsResponse struct {

    // The resulting per-annotation entries, ordered consistently with the
    // original request.
    Entries []*BatchCreateAnnotationsResponse_Entry `protobuf:"bytes,1,rep,name=entries,proto3" json:"entries,omitempty"`
    // contains filtered or unexported fields
}

type BatchCreateAnnotationsResponse_Entry struct {

    // The creation status.
    Status *status.Status `protobuf:"bytes,1,opt,name=status,proto3" json:"status,omitempty"`
    // The created annotation, if creation was successful.
    Annotation *Annotation `protobuf:"bytes,2,opt,name=annotation,proto3" json:"annotation,omitempty"`
    // contains filtered or unexported fields
}

type CallSet struct {

    // The server-generated call set ID, unique across all call sets.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The call set name.
    Name string `protobuf:"bytes,2,opt,name=name,proto3" json:"name,omitempty"`
    // The sample ID this call set corresponds to.
    SampleId string `protobuf:"bytes,7,opt,name=sample_id,json=sampleId,proto3" json:"sample_id,omitempty"`
    // The IDs of the variant sets this call set belongs to. This field must
    // have exactly length one, as a call set belongs to a single variant set.
    // This field is repeated for compatibility with the
    // [GA4GH 0.5.1
    // API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
    VariantSetIds []string `protobuf:"bytes,6,rep,name=variant_set_ids,json=variantSetIds,proto3" json:"variant_set_ids,omitempty"`
    // The date this call set was created in milliseconds from the epoch.
    Created int64 `protobuf:"varint,5,opt,name=created,proto3" json:"created,omitempty"`
    // A map of additional call set information. This must be of the form
    // map<string, string[]> (string key mapping to a list of string values).
    Info map[string]*structpb.ListValue `protobuf:"bytes,4,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

type CigarUnit struct {
    Operation CigarUnit_Operation `protobuf:"varint,1,opt,name=operation,proto3,enum=google.genomics.v1.CigarUnit_Operation" json:"operation,omitempty"`
    // The number of genomic bases that the operation runs for. Required.
    OperationLength int64 `protobuf:"varint,2,opt,name=operation_length,json=operationLength,proto3" json:"operation_length,omitempty"`
    // `referenceSequence` is only used at mismatches
    // (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
    // Filling this field replaces SAM's MD tag. If the relevant information is
    // not available, this field is unset.
    ReferenceSequence string `protobuf:"bytes,3,opt,name=reference_sequence,json=referenceSequence,proto3" json:"reference_sequence,omitempty"`
    // contains filtered or unexported fields
}

type CigarUnit_Operation int32

const (
    CigarUnit_OPERATION_UNSPECIFIED CigarUnit_Operation = 0
    // An alignment match indicates that a sequence can be aligned to the
    // reference without evidence of an INDEL. Unlike the
    // `SEQUENCE_MATCH` and `SEQUENCE_MISMATCH` operators,
    // the `ALIGNMENT_MATCH` operator does not indicate whether the
    // reference and read sequences are an exact match. This operator is
    // equivalent to SAM's `M`.
    CigarUnit_ALIGNMENT_MATCH CigarUnit_Operation = 1
    // The insert operator indicates that the read contains evidence of bases
    // being inserted into the reference. This operator is equivalent to SAM's
    // `I`.
    CigarUnit_INSERT CigarUnit_Operation = 2
    // The delete operator indicates that the read contains evidence of bases
    // being deleted from the reference. This operator is equivalent to SAM's
    // `D`.
    CigarUnit_DELETE CigarUnit_Operation = 3
    // The skip operator indicates that this read skips a long segment of the
    // reference, but the bases have not been deleted. This operator is commonly
    // used when working with RNA-seq data, where reads may skip long segments
    // of the reference between exons. This operator is equivalent to SAM's
    // `N`.
    CigarUnit_SKIP CigarUnit_Operation = 4
    // The soft clip operator indicates that bases at the start/end of a read
    // have not been considered during alignment. This may occur if the majority
    // of a read maps, except for low quality bases at the start/end of a read.
    // This operator is equivalent to SAM's `S`. Bases that are soft
    // clipped will still be stored in the read.
    CigarUnit_CLIP_SOFT CigarUnit_Operation = 5
    // The hard clip operator indicates that bases at the start/end of a read
    // have been omitted from this alignment. This may occur if this linear
    // alignment is part of a chimeric alignment, or if the read has been
    // trimmed (for example, during error correction or to trim poly-A tails for
    // RNA-seq). This operator is equivalent to SAM's `H`.
    CigarUnit_CLIP_HARD CigarUnit_Operation = 6
    // The pad operator indicates that there is padding in an alignment. This
    // operator is equivalent to SAM's `P`.
    CigarUnit_PAD CigarUnit_Operation = 7
    // This operator indicates that this portion of the aligned sequence exactly
    // matches the reference. This operator is equivalent to SAM's `=`.
    CigarUnit_SEQUENCE_MATCH CigarUnit_Operation = 8
    // This operator indicates that this portion of the aligned sequence is an
    // alignment match to the reference, but a sequence mismatch. This can
    // indicate a SNP or a read error. This operator is equivalent to SAM's
    // `X`.
    CigarUnit_SEQUENCE_MISMATCH CigarUnit_Operation = 9
)

type CoverageBucket struct {

    // The genomic coordinate range spanned by this bucket.
    Range *Range `protobuf:"bytes,1,opt,name=range,proto3" json:"range,omitempty"`
    // The average number of reads which are aligned to each individual
    // reference base in this bucket.
    MeanCoverage float32 `protobuf:"fixed32,2,opt,name=mean_coverage,json=meanCoverage,proto3" json:"mean_coverage,omitempty"`
    // contains filtered or unexported fields
}

type CreateAnnotationRequest struct {

    // The annotation to be created.
    Annotation *Annotation `protobuf:"bytes,1,opt,name=annotation,proto3" json:"annotation,omitempty"`
    // contains filtered or unexported fields
}

type CreateAnnotationSetRequest struct {

    // The annotation set to create.
    AnnotationSet *AnnotationSet `protobuf:"bytes,1,opt,name=annotation_set,json=annotationSet,proto3" json:"annotation_set,omitempty"`
    // contains filtered or unexported fields
}

type CreateCallSetRequest struct {

    // The call set to be created.
    CallSet *CallSet `protobuf:"bytes,1,opt,name=call_set,json=callSet,proto3" json:"call_set,omitempty"`
    // contains filtered or unexported fields
}

type CreateDatasetRequest struct {

    // The dataset to be created. Must contain projectId and name.
    Dataset *Dataset `protobuf:"bytes,1,opt,name=dataset,proto3" json:"dataset,omitempty"`
    // contains filtered or unexported fields
}

type CreateVariantRequest struct {

    // The variant to be created.
    Variant *Variant `protobuf:"bytes,1,opt,name=variant,proto3" json:"variant,omitempty"`
    // contains filtered or unexported fields
}

type CreateVariantSetRequest struct {

    // Required. The variant set to be created. Must have a valid `datasetId`.
    VariantSet *VariantSet `protobuf:"bytes,1,opt,name=variant_set,json=variantSet,proto3" json:"variant_set,omitempty"`
    // contains filtered or unexported fields
}

type Dataset struct {

    // The server-generated dataset ID, unique across all datasets.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The Google Cloud project ID that this dataset belongs to.
    ProjectId string `protobuf:"bytes,2,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // The dataset name.
    Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
    // The time this dataset was created, in seconds from the epoch.
    CreateTime *timestamppb.Timestamp `protobuf:"bytes,4,opt,name=create_time,json=createTime,proto3" json:"create_time,omitempty"`
    // contains filtered or unexported fields
}

type DatasetServiceV1Client interface {
    // Lists datasets within a project.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    ListDatasets(ctx context.Context, in *ListDatasetsRequest, opts ...grpc.CallOption) (*ListDatasetsResponse, error)
    // Creates a new dataset.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    CreateDataset(ctx context.Context, in *CreateDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
    // Gets a dataset by ID.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    GetDataset(ctx context.Context, in *GetDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
    // Updates a dataset.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // This method supports patch semantics.
    UpdateDataset(ctx context.Context, in *UpdateDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
    // Deletes a dataset and all of its contents (all read group sets,
    // reference sets, variant sets, call sets, annotation sets, etc.)
    // This is reversible (up to one week after the deletion) via
    // the
    // [datasets.undelete][google.genomics.v1.DatasetServiceV1.UndeleteDataset]
    // operation.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    DeleteDataset(ctx context.Context, in *DeleteDatasetRequest, opts ...grpc.CallOption) (*emptypb.Empty, error)
    // Undeletes a dataset by restoring a dataset which was deleted via this API.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // This operation is only possible for a week after the deletion occurred.
    UndeleteDataset(ctx context.Context, in *UndeleteDatasetRequest, opts ...grpc.CallOption) (*Dataset, error)
    // Sets the access control policy on the specified dataset. Replaces any
    // existing policy.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
    // Policy</a> for more information.
    SetIamPolicy(ctx context.Context, in *v1.SetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error)
    // Gets the access control policy for the dataset. This is empty if the
    // policy or resource does not exist.
    //
    // See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a
    // Policy</a> for more information.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    GetIamPolicy(ctx context.Context, in *v1.GetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error)
    // Returns permissions that a caller has on the specified resource.
    // See <a href="/iam/docs/managing-policies#testing_permissions">Testing
    // Permissions</a> for more information.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    TestIamPermissions(ctx context.Context, in *v1.TestIamPermissionsRequest, opts ...grpc.CallOption) (*v1.TestIamPermissionsResponse, error)
}

type DatasetServiceV1Server interface {
    // Lists datasets within a project.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    ListDatasets(context.Context, *ListDatasetsRequest) (*ListDatasetsResponse, error)
    // Creates a new dataset.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    CreateDataset(context.Context, *CreateDatasetRequest) (*Dataset, error)
    // Gets a dataset by ID.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    GetDataset(context.Context, *GetDatasetRequest) (*Dataset, error)
    // Updates a dataset.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // This method supports patch semantics.
    UpdateDataset(context.Context, *UpdateDatasetRequest) (*Dataset, error)
    // Deletes a dataset and all of its contents (all read group sets,
    // reference sets, variant sets, call sets, annotation sets, etc.)
    // This is reversible (up to one week after the deletion) via
    // the
    // [datasets.undelete][google.genomics.v1.DatasetServiceV1.UndeleteDataset]
    // operation.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    DeleteDataset(context.Context, *DeleteDatasetRequest) (*emptypb.Empty, error)
    // Undeletes a dataset by restoring a dataset which was deleted via this API.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // This operation is only possible for a week after the deletion occurred.
    UndeleteDataset(context.Context, *UndeleteDatasetRequest) (*Dataset, error)
    // Sets the access control policy on the specified dataset. Replaces any
    // existing policy.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    //
    // See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
    // Policy</a> for more information.
    SetIamPolicy(context.Context, *v1.SetIamPolicyRequest) (*v1.Policy, error)
    // Gets the access control policy for the dataset. This is empty if the
    // policy or resource does not exist.
    //
    // See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a
    // Policy</a> for more information.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    GetIamPolicy(context.Context, *v1.GetIamPolicyRequest) (*v1.Policy, error)
    // Returns permissions that a caller has on the specified resource.
    // See <a href="/iam/docs/managing-policies#testing_permissions">Testing
    // Permissions</a> for more information.
    //
    // For the definitions of datasets and other genomics resources, see
    // [Fundamentals of Google
    // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    TestIamPermissions(context.Context, *v1.TestIamPermissionsRequest) (*v1.TestIamPermissionsResponse, error)
}

type DeleteAnnotationRequest struct {

    // The ID of the annotation to be deleted.
    AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
    // contains filtered or unexported fields
}

type DeleteAnnotationSetRequest struct {

    // The ID of the annotation set to be deleted.
    AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
    // contains filtered or unexported fields
}

type DeleteCallSetRequest struct {

    // The ID of the call set to be deleted.
    CallSetId string `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId,proto3" json:"call_set_id,omitempty"`
    // contains filtered or unexported fields
}

type DeleteDatasetRequest struct {

    // The ID of the dataset to be deleted.
    DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    // contains filtered or unexported fields
}

type DeleteReadGroupSetRequest struct {

    // The ID of the read group set to be deleted. The caller must have WRITE
    // permissions to the dataset associated with this read group set.
    ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // contains filtered or unexported fields
}

type DeleteVariantRequest struct {

    // The ID of the variant to be deleted.
    VariantId string `protobuf:"bytes,1,opt,name=variant_id,json=variantId,proto3" json:"variant_id,omitempty"`
    // contains filtered or unexported fields
}

type DeleteVariantSetRequest struct {

    // The ID of the variant set to be deleted.
    VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
    // contains filtered or unexported fields
}

type ExportReadGroupSetRequest struct {

    // Required. The Google Cloud project ID that owns this
    // export. The caller must have WRITE access to this project.
    ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // Required. A Google Cloud Storage URI for the exported BAM file.
    // The currently authenticated user must have write access to the new file.
    // An error will be returned if the URI already contains data.
    ExportUri string `protobuf:"bytes,2,opt,name=export_uri,json=exportUri,proto3" json:"export_uri,omitempty"`
    // Required. The ID of the read group set to export. The caller must have
    // READ access to this read group set.
    ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // The reference names to export. If this is not specified, all reference
    // sequences, including unmapped reads, are exported.
    // Use `*` to export only unmapped reads.
    ReferenceNames []string `protobuf:"bytes,4,rep,name=reference_names,json=referenceNames,proto3" json:"reference_names,omitempty"`
    // contains filtered or unexported fields
}

type ExportVariantSetRequest struct {

    // Required. The ID of the variant set that contains variant data which
    // should be exported. The caller must have READ access to this variant set.
    VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
    // If provided, only variant call information from the specified call sets
    // will be exported. By default all variant calls are exported.
    CallSetIds []string `protobuf:"bytes,2,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
    // Required. The Google Cloud project ID that owns the destination
    // BigQuery dataset. The caller must have WRITE access to this project.  This
    // project will also own the resulting export job.
    ProjectId string `protobuf:"bytes,3,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // The format for the exported data.
    Format ExportVariantSetRequest_Format `protobuf:"varint,4,opt,name=format,proto3,enum=google.genomics.v1.ExportVariantSetRequest_Format" json:"format,omitempty"`
    // Required. The BigQuery dataset to export data to. This dataset must already
    // exist. Note that this is distinct from the Genomics concept of "dataset".
    BigqueryDataset string `protobuf:"bytes,5,opt,name=bigquery_dataset,json=bigqueryDataset,proto3" json:"bigquery_dataset,omitempty"`
    // Required. The BigQuery table to export data to.
    // If the table doesn't exist, it will be created. If it already exists, it
    // will be overwritten.
    BigqueryTable string `protobuf:"bytes,6,opt,name=bigquery_table,json=bigqueryTable,proto3" json:"bigquery_table,omitempty"`
    // contains filtered or unexported fields
}

type ExportVariantSetRequest_Format int32

const (
    ExportVariantSetRequest_FORMAT_UNSPECIFIED ExportVariantSetRequest_Format = 0
    // Export the data to Google BigQuery.
    ExportVariantSetRequest_FORMAT_BIGQUERY ExportVariantSetRequest_Format = 1
)

type ExternalId struct {

    // The name of the source of this data.
    SourceName string `protobuf:"bytes,1,opt,name=source_name,json=sourceName,proto3" json:"source_name,omitempty"`
    // The id used by the source of this data.
    Id  string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
    // contains filtered or unexported fields
}

type GetAnnotationRequest struct {

    // The ID of the annotation to be retrieved.
    AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
    // contains filtered or unexported fields
}

type GetAnnotationSetRequest struct {

    // The ID of the annotation set to be retrieved.
    AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
    // contains filtered or unexported fields
}

type GetCallSetRequest struct {

    // The ID of the call set.
    CallSetId string `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId,proto3" json:"call_set_id,omitempty"`
    // contains filtered or unexported fields
}

type GetDatasetRequest struct {

    // The ID of the dataset.
    DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    // contains filtered or unexported fields
}

type GetReadGroupSetRequest struct {

    // The ID of the read group set.
    ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // contains filtered or unexported fields
}

type GetReferenceRequest struct {

    // The ID of the reference.
    ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
    // contains filtered or unexported fields
}

type GetReferenceSetRequest struct {

    // The ID of the reference set.
    ReferenceSetId string `protobuf:"bytes,1,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    // contains filtered or unexported fields
}

type GetVariantRequest struct {

    // The ID of the variant.
    VariantId string `protobuf:"bytes,1,opt,name=variant_id,json=variantId,proto3" json:"variant_id,omitempty"`
    // contains filtered or unexported fields
}

type GetVariantSetRequest struct {

    // Required. The ID of the variant set.
    VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
    // contains filtered or unexported fields
}

type ImportReadGroupSetsRequest struct {

    // Required. The ID of the dataset these read group sets will belong to. The
    // caller must have WRITE permissions to this dataset.
    DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
    // The reference set to which the imported read group sets are aligned to, if
    // any. The reference names of this reference set must be a superset of those
    // found in the imported file headers. If no reference set id is provided, a
    // best effort is made to associate with a matching reference set.
    ReferenceSetId string `protobuf:"bytes,4,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
    // A list of URIs pointing at [BAM
    // files](https://samtools.github.io/hts-specs/SAMv1.pdf)
    // in Google Cloud Storage.
    // Those URIs can include wildcards (*), but do not add or remove
    // matching files before import has completed.
    //
    // Note that Google Cloud Storage object listing is only eventually
    // consistent: files added may be not be immediately visible to
    // everyone. Thus, if using a wildcard it is preferable not to start
    // the import immediately after the files are created.
    SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"`
    // The partition strategy describes how read groups are partitioned into read
    // group sets.
    PartitionStrategy ImportReadGroupSetsRequest_PartitionStrategy `protobuf:"varint,5,opt,name=partition_strategy,json=partitionStrategy,proto3,enum=google.genomics.v1.ImportReadGroupSetsRequest_PartitionStrategy" json:"partition_strategy,omitempty"`
    // contains filtered or unexported fields
}

type ImportReadGroupSetsRequest_PartitionStrategy int32

const (
    ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED ImportReadGroupSetsRequest_PartitionStrategy = 0
    // In most cases, this strategy yields one read group set per file. This is
    // the default behavior.
    //
    // Allocate one read group set per file per sample. For BAM files, read
    // groups are considered to share a sample if they have identical sample
    // names. Furthermore, all reads for each file which do not belong to a read
    // group, if any, will be grouped into a single read group set per-file.
    ImportReadGroupSetsRequest_PER_FILE_PER_SAMPLE ImportReadGroupSetsRequest_PartitionStrategy = 1
    // Includes all read groups in all imported files into a single read group
    // set. Requires that the headers for all imported files are equivalent. All
    // reads which do not belong to a read group, if any, will be grouped into a
    // separate read group set.
    ImportReadGroupSetsRequest_MERGE_ALL ImportReadGroupSetsRequest_PartitionStrategy = 2
)

type ImportReadGroupSetsResponse struct {

    // IDs of the read group sets that were created.
    ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"`
    // contains filtered or unexported fields
}

type ImportVariantsRequest struct {

    // Required. The variant set to which variant data should be imported.
    VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
    // A list of URIs referencing variant files in Google Cloud Storage. URIs can
    // include wildcards [as described
    // here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
    // Note that recursive wildcards ('**') are not supported.
    SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"`
    // The format of the variant data being imported. If unspecified, defaults to
    // to `VCF`.
    Format ImportVariantsRequest_Format `protobuf:"varint,3,opt,name=format,proto3,enum=google.genomics.v1.ImportVariantsRequest_Format" json:"format,omitempty"`
    // Convert reference names to the canonical representation.
    // hg19 haploytypes (those reference names containing "_hap")
    // are not modified in any way.
    // All other reference names are modified according to the following rules:
    // The reference name is capitalized.
    // The "chr" prefix is dropped for all autosomes and sex chromsomes.
    // For example "chr17" becomes "17" and "chrX" becomes "X".
    // All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
    NormalizeReferenceNames bool `protobuf:"varint,5,opt,name=normalize_reference_names,json=normalizeReferenceNames,proto3" json:"normalize_reference_names,omitempty"`
    // A mapping between info field keys and the InfoMergeOperations to
    // be performed on them. This is plumbed down to the MergeVariantRequests
    // generated by the resulting import job.
    InfoMergeConfig map[string]InfoMergeOperation `protobuf:"bytes,6,rep,name=info_merge_config,json=infoMergeConfig,proto3" json:"info_merge_config,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"varint,2,opt,name=value,proto3,enum=google.genomics.v1.InfoMergeOperation"`
    // contains filtered or unexported fields
}

type ImportVariantsRequest_Format int32

const (
    ImportVariantsRequest_FORMAT_UNSPECIFIED ImportVariantsRequest_Format = 0
    // VCF (Variant Call Format). The VCF files may be gzip compressed. gVCF is
    // also supported.
    ImportVariantsRequest_FORMAT_VCF ImportVariantsRequest_Format = 1
    // Complete Genomics masterVarBeta format. The masterVarBeta files may
    // be bzip2 compressed.
    ImportVariantsRequest_FORMAT_COMPLETE_GENOMICS ImportVariantsRequest_Format = 2
)

type ImportVariantsResponse struct {

    // IDs of the call sets created during the import.
    CallSetIds []string `protobuf:"bytes,1,rep,name=call_set_ids,json=callSetIds,proto3" json:"call_set_ids,omitempty"`
    // contains filtered or unexported fields
}

type InfoMergeOperation int32

const (
    InfoMergeOperation_INFO_MERGE_OPERATION_UNSPECIFIED InfoMergeOperation = 0
    // By default, Variant info fields are persisted if the Variant doesn't
    // already exist in the variantset.  If the Variant is equivalent to a
    // Variant already in the variantset, the incoming Variant's info field
    // is ignored in favor of that of the already persisted Variant.
    InfoMergeOperation_IGNORE_NEW InfoMergeOperation = 1
    // This operation removes an info field from the incoming Variant
    // and persists this info field in each of the incoming Variant's Calls.
    InfoMergeOperation_MOVE_TO_CALLS InfoMergeOperation = 2
)

type LinearAlignment struct {

    // The position of this alignment.
    Position *Position `protobuf:"bytes,1,opt,name=position,proto3" json:"position,omitempty"`
    // The mapping quality of this alignment. Represents how likely
    // the read maps to this position as opposed to other locations.
    //
    // Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
    // the nearest integer.
    MappingQuality int32 `protobuf:"varint,2,opt,name=mapping_quality,json=mappingQuality,proto3" json:"mapping_quality,omitempty"`
    // Represents the local alignment of this sequence (alignment matches, indels,
    // etc) against the reference.
    Cigar []*CigarUnit `protobuf:"bytes,3,rep,name=cigar,proto3" json:"cigar,omitempty"`
    // contains filtered or unexported fields
}

type ListBasesRequest struct {

    // The ID of the reference.
    ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
    // The start position (0-based) of this query. Defaults to 0.
    Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
    // The end position (0-based, exclusive) of this query. Defaults to the length
    // of this reference.
    End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of bases to return in a single page. If unspecified,
    // defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
    // pairs).
    PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

type ListBasesResponse struct {

    // The offset position (0-based) of the given `sequence` from the
    // start of this `Reference`. This value will differ for each page
    // in a paginated request.
    Offset int64 `protobuf:"varint,1,opt,name=offset,proto3" json:"offset,omitempty"`
    // A substring of the bases that make up this reference.
    Sequence string `protobuf:"bytes,2,opt,name=sequence,proto3" json:"sequence,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

type ListCoverageBucketsRequest struct {

    // Required. The ID of the read group set over which coverage is requested.
    ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // The name of the reference to query, within the reference set associated
    // with this query. Optional.
    ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The start position of the range on the reference, 0-based inclusive. If
    // specified, `referenceName` must also be specified. Defaults to 0.
    Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
    // The end position of the range on the reference, 0-based exclusive. If
    // specified, `referenceName` must also be specified. If unset or 0, defaults
    // to the length of the reference.
    End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
    // The desired width of each reported coverage bucket in base pairs. This
    // will be rounded down to the nearest precomputed bucket width; the value
    // of which is returned as `bucketWidth` in the response. Defaults
    // to infinity (each bucket spans an entire reference sequence) or the length
    // of the target range, if specified. The smallest precomputed
    // `bucketWidth` is currently 2048 base pairs; this is subject to
    // change.
    TargetBucketWidth int64 `protobuf:"varint,6,opt,name=target_bucket_width,json=targetBucketWidth,proto3" json:"target_bucket_width,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 1024. The maximum value is 2048.
    PageSize int32 `protobuf:"varint,8,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // contains filtered or unexported fields
}

type ListCoverageBucketsResponse struct {

    // The length of each coverage bucket in base pairs. Note that buckets at the
    // end of a reference sequence may be shorter. This value is omitted if the
    // bucket width is infinity (the default behaviour, with no range or
    // `targetBucketWidth`).
    BucketWidth int64 `protobuf:"varint,1,opt,name=bucket_width,json=bucketWidth,proto3" json:"bucket_width,omitempty"`
    // The coverage buckets. The list of buckets is sparse; a bucket with 0
    // overlapping reads is not returned. A bucket never crosses more than one
    // reference sequence. Each bucket has width `bucketWidth`, unless
    // its end is the end of the reference sequence.
    CoverageBuckets []*CoverageBucket `protobuf:"bytes,2,rep,name=coverage_buckets,json=coverageBuckets,proto3" json:"coverage_buckets,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

type ListDatasetsRequest struct {

    // Required. The Google Cloud project ID to list datasets for.
    ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // The maximum number of results to return in a single page. If unspecified,
    // defaults to 50. The maximum value is 1024.
    PageSize int32 `protobuf:"varint,2,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // To get the next page of results, set this parameter to the value of
    // `nextPageToken` from the previous response.
    PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
    // contains filtered or unexported fields
}

type ListDatasetsResponse struct {

    // The list of matching Datasets.
    Datasets []*Dataset `protobuf:"bytes,1,rep,name=datasets,proto3" json:"datasets,omitempty"`
    // The continuation token, which is used to page through large result sets.
    // Provide this value in a subsequent request to return the next page of
    // results. This field will be empty if there aren't any additional results.
    NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
    // contains filtered or unexported fields
}

type MergeVariantsRequest struct {

    // The destination variant set.
    VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId,proto3" json:"variant_set_id,omitempty"`
    // The variants to be merged with existing variants.
    Variants []*Variant `protobuf:"bytes,2,rep,name=variants,proto3" json:"variants,omitempty"`
    // A mapping between info field keys and the InfoMergeOperations to
    // be performed on them.
    InfoMergeConfig map[string]InfoMergeOperation `protobuf:"bytes,3,rep,name=info_merge_config,json=infoMergeConfig,proto3" json:"info_merge_config,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"varint,2,opt,name=value,proto3,enum=google.genomics.v1.InfoMergeOperation"`
    // contains filtered or unexported fields
}

type OperationEvent struct {

    // Optional time of when event started.
    StartTime *timestamppb.Timestamp `protobuf:"bytes,1,opt,name=start_time,json=startTime,proto3" json:"start_time,omitempty"`
    // Optional time of when event finished. An event can have a start time and no
    // finish time. If an event has a finish time, there must be a start time.
    EndTime *timestamppb.Timestamp `protobuf:"bytes,2,opt,name=end_time,json=endTime,proto3" json:"end_time,omitempty"`
    // Required description of event.
    Description string `protobuf:"bytes,3,opt,name=description,proto3" json:"description,omitempty"`
    // contains filtered or unexported fields
}

type OperationMetadata struct {

    // The Google Cloud Project in which the job is scoped.
    ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
    // The time at which the job was submitted to the Genomics service.
    CreateTime *timestamppb.Timestamp `protobuf:"bytes,2,opt,name=create_time,json=createTime,proto3" json:"create_time,omitempty"`
    // The time at which the job began to run.
    StartTime *timestamppb.Timestamp `protobuf:"bytes,3,opt,name=start_time,json=startTime,proto3" json:"start_time,omitempty"`
    // The time at which the job stopped running.
    EndTime *timestamppb.Timestamp `protobuf:"bytes,4,opt,name=end_time,json=endTime,proto3" json:"end_time,omitempty"`
    // The original request that started the operation. Note that this will be in
    // current version of the API. If the operation was started with v1beta2 API
    // and a GetOperation is performed on v1 API, a v1 request will be returned.
    Request *anypb.Any `protobuf:"bytes,5,opt,name=request,proto3" json:"request,omitempty"`
    // Optional event messages that were generated during the job's execution.
    // This also contains any warnings that were generated during import
    // or export.
    Events []*OperationEvent `protobuf:"bytes,6,rep,name=events,proto3" json:"events,omitempty"`
    // This field is deprecated. Use `labels` instead. Optionally provided by the
    // caller when submitting the request that creates the operation.
    ClientId string `protobuf:"bytes,7,opt,name=client_id,json=clientId,proto3" json:"client_id,omitempty"`
    // Runtime metadata on this Operation.
    RuntimeMetadata *anypb.Any `protobuf:"bytes,8,opt,name=runtime_metadata,json=runtimeMetadata,proto3" json:"runtime_metadata,omitempty"`
    // Optionally provided by the caller when submitting the request that creates
    // the operation.
    Labels map[string]string `protobuf:"bytes,9,rep,name=labels,proto3" json:"labels,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}

type Position struct {

    // The name of the reference in whatever reference set is being used.
    ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The 0-based offset from the start of the forward strand for that reference.
    Position int64 `protobuf:"varint,2,opt,name=position,proto3" json:"position,omitempty"`
    // Whether this position is on the reverse strand, as opposed to the forward
    // strand.
    ReverseStrand bool `protobuf:"varint,3,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
    // contains filtered or unexported fields
}

type Range struct {

    // The reference sequence name, for example `chr1`,
    // `1`, or `chrX`.
    ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
    // The start position of the range on the reference, 0-based inclusive.
    Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
    // The end position of the range on the reference, 0-based exclusive.
    End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
    // contains filtered or unexported fields
}

type Read struct {

    // The server-generated read ID, unique across all reads. This is different
    // from the `fragmentName`.
    Id  string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
    // The ID of the read group this read belongs to. A read belongs to exactly
    // one read group. This is a server-generated ID which is distinct from SAM's
    // RG tag (for that value, see
    // [ReadGroup.name][google.genomics.v1.ReadGroup.name]).
    ReadGroupId string `protobuf:"bytes,2,opt,name=read_group_id,json=readGroupId,proto3" json:"read_group_id,omitempty"`
    // The ID of the read group set this read belongs to. A read belongs to
    // exactly one read group set.
    ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
    // The fragment name. Equivalent to QNAME (query template name) in SAM.
    FragmentName string `protobuf:"bytes,4,opt,name=fragment_name,json=fragmentName,proto3" json:"fragment_name,omitempty"`
    // The orientation and the distance between reads from the fragment are
    // consistent with the sequencing protocol (SAM flag 0x2).
    ProperPlacement bool `protobuf:"varint,5,opt,name=proper_placement,json=properPlacement,proto3" json:"proper_placement,omitempty"`
    // The fragment is a PCR or optical duplicate (SAM flag 0x400).
    DuplicateFragment bool `protobuf:"varint,6,opt,name=duplicate_fragment,json=duplicateFragment,proto3" json:"duplicate_fragment,omitempty"`
    // The observed length of the fragment, equivalent to TLEN in SAM.
    FragmentLength int32 `protobuf:"varint,7,opt,name=fragment_length,json=fragmentLength,proto3" json:"fragment_length,omitempty"`
    // The read number in sequencing. 0-based and less than numberReads. This
    // field replaces SAM flag 0x40 and 0x80.
    ReadNumber int32 `protobuf:"varint,8,opt,name=read_number,json=readNumber,proto3" json:"read_number,omitempty"`
    // The number of reads in the fragment (extension to SAM flag 0x1).
    NumberReads int32 `protobuf:"varint,9,opt,name=number_reads,json=numberReads,proto3" json:"number_reads,omitempty"`
    // Whether this read did not pass filters, such as platform or vendor quality
    // controls (SAM flag 0x200).
    FailedVendorQualityChecks bool `protobuf:"varint,10,opt,name=failed_vendor_quality_checks,json=failedVendorQualityChecks,proto3" json:"failed_vendor_quality_checks,omitempty"`
    // The linear alignment for this alignment record. This field is null for
    // unmapped reads.
    Alignment *LinearAlignment `protobuf:"bytes,11,opt,name=alignment,proto3" json:"alignment,omitempty"`
    // Whether this alignment is secondary. Equivalent to SAM flag 0x100.
    // A secondary alignment represents an alternative to the primary alignment
    // for this read. Aligners may return secondary alignments if a read can map
    // ambiguously to multiple coordinates in the genome. By convention, each read
    // has one and only one alignment where both `secondaryAlignment`
    // and `supplementaryAlignment` are false.
    SecondaryAlignment bool `protobuf:"varint,12,opt,name=secondary_alignment,json=secondaryAlignment,proto3" json:"secondary_alignment,omitempty"`
    // Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
    // Supplementary alignments are used in the representation of a chimeric
    // alignment. In a chimeric alignment, a read is split into multiple
    // linear alignments that map to different reference contigs. The first
    // linear alignment in the read will be designated as the representative
    // alignment; the remaining linear alignments will be designated as
    // supplementary alignments. These alignments may have different mapping
    // quality scores. In each linear alignment in a chimeric alignment, the read
    // will be hard clipped. The `alignedSequence` and
    // `alignedQuality` fields in the alignment record will only
    // represent the bases for its respective linear alignment.
    SupplementaryAlignment bool `protobuf:"varint,13,opt,name=supplementary_alignment,json=supplementaryAlignment,proto3" json:"supplementary_alignment,omitempty"`
    // The bases of the read sequence contained in this alignment record,
    // **without CIGAR operations applied** (equivalent to SEQ in SAM).
    // `alignedSequence` and `alignedQuality` may be
    // shorter than the full read sequence and quality. This will occur if the
    // alignment is part of a chimeric alignment, or if the read was trimmed. When
    // this occurs, the CIGAR for this read will begin/end with a hard clip
    // operator that will indicate the length of the excised sequence.
    AlignedSequence string `protobuf:"bytes,14,opt,name=aligned_sequence,json=alignedSequence,proto3" json:"aligned_sequence,omitempty"`
    // The quality of the read sequence contained in this alignment record
    // (equivalent to QUAL in SAM).
    // `alignedSequence` and `alignedQuality` may be shorter than the full read
    // sequence and quality. This will occur if the alignment is part of a
    // chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR
    // for this read will begin/end with a hard clip operator that will indicate
    // the length of the excised sequence.
    AlignedQuality []int32 `protobuf:"varint,15,rep,packed,name=aligned_quality,json=alignedQuality,proto3" json:"aligned_quality,omitempty"`
    // The mapping of the primary alignment of the
    // `(readNumber+1)%numberReads` read in the fragment. It replaces
    // mate position and mate strand in SAM.
    NextMatePosition *Position `protobuf:"bytes,16,opt,name=next_mate_position,json=nextMatePosition,proto3" json:"next_mate_position,omitempty"`
    // A map of additional read alignment information. This must be of the form
    // map<string, string[]> (string key mapping to a list of string values).
    Info map[string]*structpb.ListValue `protobuf:"bytes,17,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
    // contains filtered or unexported fields
}