genomics

type ComputeEngine struct {

	// The instance on which the operation is running.
	InstanceName string `protobuf:"bytes,1,opt,name=instance_name,json=instanceName,proto3" json:"instance_name,omitempty"`
	// The availability zone in which the instance resides.
	Zone string `protobuf:"bytes,2,opt,name=zone,proto3" json:"zone,omitempty"`
	// The machine type of the instance.
	MachineType string `protobuf:"bytes,3,opt,name=machine_type,json=machineType,proto3" json:"machine_type,omitempty"`
	// The names of the disks that were created for this pipeline.
	DiskNames []string `protobuf:"bytes,4,rep,name=disk_names,json=diskNames,proto3" json:"disk_names,omitempty"`
	// contains filtered or unexported fields
}

type ControllerConfig struct {
	Image       string                                      `protobuf:"bytes,1,opt,name=image,proto3" json:"image,omitempty"`
	Cmd         string                                      `protobuf:"bytes,2,opt,name=cmd,proto3" json:"cmd,omitempty"`
	GcsLogPath  string                                      `protobuf:"bytes,3,opt,name=gcs_log_path,json=gcsLogPath,proto3" json:"gcs_log_path,omitempty"`
	MachineType string                                      `protobuf:"bytes,4,opt,name=machine_type,json=machineType,proto3" json:"machine_type,omitempty"`
	Vars        map[string]string                           `` /* 149-byte string literal not displayed */
	Disks       map[string]string                           `` /* 151-byte string literal not displayed */
	GcsSources  map[string]*ControllerConfig_RepeatedString `` /* 179-byte string literal not displayed */
	GcsSinks    map[string]*ControllerConfig_RepeatedString `` /* 173-byte string literal not displayed */
	// contains filtered or unexported fields
}

type ControllerConfig_RepeatedString struct {
	Values []string `protobuf:"bytes,1,rep,name=values,proto3" json:"values,omitempty"`
	// contains filtered or unexported fields
}

type CreatePipelineRequest struct {

	// The pipeline to create. Should not have `pipelineId` populated.
	Pipeline *Pipeline `protobuf:"bytes,1,opt,name=pipeline,proto3" json:"pipeline,omitempty"`
	// contains filtered or unexported fields
}

type DeletePipelineRequest struct {

	// Caller must have WRITE access to the project in which this pipeline
	// is defined.
	PipelineId string `protobuf:"bytes,1,opt,name=pipeline_id,json=pipelineId,proto3" json:"pipeline_id,omitempty"`
	// contains filtered or unexported fields
}

type DockerExecutor struct {

	// Required. Image name from either Docker Hub or Google Container Registry.
	// Users that run pipelines must have READ access to the image.
	ImageName string `protobuf:"bytes,1,opt,name=image_name,json=imageName,proto3" json:"image_name,omitempty"`
	// Required. The command or newline delimited script to run. The command
	// string will be executed within a bash shell.
	//
	// If the command exits with a non-zero exit code, output parameter
	// de-localization will be skipped and the pipeline operation's
	// [`error`][google.longrunning.Operation.error] field will be populated.
	//
	// Maximum command string length is 16384.
	Cmd string `protobuf:"bytes,2,opt,name=cmd,proto3" json:"cmd,omitempty"`
	// contains filtered or unexported fields
}

type GetControllerConfigRequest struct {

	// The operation to retrieve controller configuration for.
	OperationId     string `protobuf:"bytes,1,opt,name=operation_id,json=operationId,proto3" json:"operation_id,omitempty"`
	ValidationToken uint64 `protobuf:"varint,2,opt,name=validation_token,json=validationToken,proto3" json:"validation_token,omitempty"`
	// contains filtered or unexported fields
}

type GetPipelineRequest struct {

	// Caller must have READ access to the project in which this pipeline
	// is defined.
	PipelineId string `protobuf:"bytes,1,opt,name=pipeline_id,json=pipelineId,proto3" json:"pipeline_id,omitempty"`
	// contains filtered or unexported fields
}

type ListPipelinesRequest struct {

	// Required. The name of the project to search for pipelines. Caller
	// must have READ access to this project.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// Pipelines with names that match this prefix should be
	// returned.  If unspecified, all pipelines in the project, up to
	// `pageSize`, will be returned.
	NamePrefix string `protobuf:"bytes,2,opt,name=name_prefix,json=namePrefix,proto3" json:"name_prefix,omitempty"`
	// Number of pipelines to return at once. Defaults to 256, and max
	// is 2048.
	PageSize int32 `protobuf:"varint,3,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
	// Token to use to indicate where to start getting results.
	// If unspecified, returns the first page of results.
	PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
	// contains filtered or unexported fields
}

type ListPipelinesResponse struct {

	// The matched pipelines.
	Pipelines []*Pipeline `protobuf:"bytes,1,rep,name=pipelines,proto3" json:"pipelines,omitempty"`
	// The token to use to get the next page of results.
	NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
	// contains filtered or unexported fields
}

type LoggingOptions struct {

	// The location in Google Cloud Storage to which the pipeline logs
	// will be copied. Can be specified as a fully qualified directory
	// path, in which case logs will be output with a unique identifier
	// as the filename in that directory, or as a fully specified path,
	// which must end in `.log`, in which case that path will be
	// used, and the user must ensure that logs are not
	// overwritten. Stdout and stderr logs from the run are also
	// generated and output as `-stdout.log` and `-stderr.log`.
	GcsPath string `protobuf:"bytes,1,opt,name=gcs_path,json=gcsPath,proto3" json:"gcs_path,omitempty"`
	// contains filtered or unexported fields
}

type Pipeline struct {

	// Required. The project in which to create the pipeline. The caller must have
	// WRITE access.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// Required. A user specified pipeline name that does not have to be unique.
	// This name can be used for filtering Pipelines in ListPipelines.
	Name string `protobuf:"bytes,2,opt,name=name,proto3" json:"name,omitempty"`
	// User-specified description.
	Description string `protobuf:"bytes,3,opt,name=description,proto3" json:"description,omitempty"`
	// Input parameters of the pipeline.
	InputParameters []*PipelineParameter `protobuf:"bytes,8,rep,name=input_parameters,json=inputParameters,proto3" json:"input_parameters,omitempty"`
	// Output parameters of the pipeline.
	OutputParameters []*PipelineParameter `protobuf:"bytes,9,rep,name=output_parameters,json=outputParameters,proto3" json:"output_parameters,omitempty"`
	// Required. The executor indicates in which environment the pipeline runs.
	//
	// Types that are assignable to Executor:
	//	*Pipeline_Docker
	Executor isPipeline_Executor `protobuf_oneof:"executor"`
	// Required. Specifies resource requirements for the pipeline run.
	// Required fields:
	//
	// *
	// [minimumCpuCores][google.genomics.v1alpha2.PipelineResources.minimum_cpu_cores]
	//
	// *
	// [minimumRamGb][google.genomics.v1alpha2.PipelineResources.minimum_ram_gb]
	Resources *PipelineResources `protobuf:"bytes,6,opt,name=resources,proto3" json:"resources,omitempty"`
	// Unique pipeline id that is generated by the service when CreatePipeline
	// is called. Cannot be specified in the Pipeline used in the
	// CreatePipelineRequest, and will be populated in the response to
	// CreatePipeline and all subsequent Get and List calls. Indicates that the
	// service has registered this pipeline.
	PipelineId string `protobuf:"bytes,7,opt,name=pipeline_id,json=pipelineId,proto3" json:"pipeline_id,omitempty"`
	// contains filtered or unexported fields
}

type PipelineParameter struct {

	// Required. Name of the parameter - the pipeline runner uses this string
	// as the key to the input and output maps in RunPipeline.
	Name string `protobuf:"bytes,1,opt,name=name,proto3" json:"name,omitempty"`
	// Human-readable description.
	Description string `protobuf:"bytes,2,opt,name=description,proto3" json:"description,omitempty"`
	// The default value for this parameter. Can be overridden at runtime.
	// If `localCopy` is present, then this must be a Google Cloud Storage path
	// beginning with `gs://`.
	DefaultValue string `protobuf:"bytes,5,opt,name=default_value,json=defaultValue,proto3" json:"default_value,omitempty"`
	// If present, this parameter is marked for copying to and from the VM.
	// `LocalCopy` indicates where on the VM the file should be. The value
	// given to this parameter (either at runtime or using `defaultValue`)
	// must be the remote path where the file should be.
	LocalCopy *PipelineParameter_LocalCopy `protobuf:"bytes,6,opt,name=local_copy,json=localCopy,proto3" json:"local_copy,omitempty"`
	// contains filtered or unexported fields
}

type PipelineParameter_LocalCopy struct {

	// Required. The path within the user's docker container where
	// this input should be localized to and from, relative to the specified
	// disk's mount point. For example: file.txt,
	Path string `protobuf:"bytes,1,opt,name=path,proto3" json:"path,omitempty"`
	// Required. The name of the disk where this parameter is
	// located. Can be the name of one of the disks specified in the
	// Resources field, or "boot", which represents the Docker
	// instance's boot disk and has a mount point of `/`.
	Disk string `protobuf:"bytes,2,opt,name=disk,proto3" json:"disk,omitempty"`
	// contains filtered or unexported fields
}

type PipelineResources struct {

	// The minimum number of cores to use. Defaults to 1.
	MinimumCpuCores int32 `protobuf:"varint,1,opt,name=minimum_cpu_cores,json=minimumCpuCores,proto3" json:"minimum_cpu_cores,omitempty"`
	// Whether to use preemptible VMs. Defaults to `false`. In order to use this,
	// must be true for both create time and run time. Cannot be true at run time
	// if false at create time.
	Preemptible bool `protobuf:"varint,2,opt,name=preemptible,proto3" json:"preemptible,omitempty"`
	// The minimum amount of RAM to use. Defaults to 3.75 (GB)
	MinimumRamGb float64 `protobuf:"fixed64,3,opt,name=minimum_ram_gb,json=minimumRamGb,proto3" json:"minimum_ram_gb,omitempty"`
	// Disks to attach.
	Disks []*PipelineResources_Disk `protobuf:"bytes,4,rep,name=disks,proto3" json:"disks,omitempty"`
	// List of Google Compute Engine availability zones to which resource
	// creation will restricted. If empty, any zone may be chosen.
	Zones []string `protobuf:"bytes,5,rep,name=zones,proto3" json:"zones,omitempty"`
	// The size of the boot disk. Defaults to 10 (GB).
	BootDiskSizeGb int32 `protobuf:"varint,6,opt,name=boot_disk_size_gb,json=bootDiskSizeGb,proto3" json:"boot_disk_size_gb,omitempty"`
	// Whether to assign an external IP to the instance. This is an experimental
	// feature that may go away. Defaults to false.
	// Corresponds to `--no_address` flag for [gcloud compute instances create]
	// (https://cloud.google.com/sdk/gcloud/reference/compute/instances/create).
	// In order to use this, must be true for both create time and run time.
	// Cannot be true at run time if false at create time. If you need to ssh into
	// a private IP VM for debugging, you can ssh to a public VM and then ssh into
	// the private VM's Internal IP.  If noAddress is set, this pipeline run may
	// only load docker images from Google Container Registry and not Docker Hub.
	// ** Note: To use this option, your project must be in Google Access for
	// Private IPs Early Access Program.**
	NoAddress bool `protobuf:"varint,7,opt,name=no_address,json=noAddress,proto3" json:"no_address,omitempty"`
	// contains filtered or unexported fields
}

type PipelineResources_Disk struct {

	// Required. The name of the disk that can be used in the pipeline
	// parameters. Must be 1 - 63 characters.
	// The name "boot" is reserved for system use.
	Name string `protobuf:"bytes,1,opt,name=name,proto3" json:"name,omitempty"`
	// Required. The type of the disk to create.
	Type PipelineResources_Disk_Type `protobuf:"varint,2,opt,name=type,proto3,enum=google.genomics.v1alpha2.PipelineResources_Disk_Type" json:"type,omitempty"`
	// The size of the disk. Defaults to 500 (GB).
	// This field is not applicable for local SSD.
	SizeGb int32 `protobuf:"varint,3,opt,name=size_gb,json=sizeGb,proto3" json:"size_gb,omitempty"`
	// The full or partial URL of the persistent disk to attach. See
	// https://cloud.google.com/compute/docs/reference/latest/instances#resource
	// and
	// https://cloud.google.com/compute/docs/disks/persistent-disks#snapshots
	// for more details.
	Source string `protobuf:"bytes,4,opt,name=source,proto3" json:"source,omitempty"`
	// Deprecated. Disks created by the Pipelines API will be deleted at the end
	// of the pipeline run, regardless of what this field is set to.
	AutoDelete bool `protobuf:"varint,6,opt,name=auto_delete,json=autoDelete,proto3" json:"auto_delete,omitempty"`
	// Required at create time and cannot be overridden at run time.
	// Specifies the path in the docker container where files on
	// this disk should be located. For example, if `mountPoint`
	// is `/mnt/disk`, and the parameter has `localPath`
	// `inputs/file.txt`, the docker container can access the data at
	// `/mnt/disk/inputs/file.txt`.
	MountPoint string `protobuf:"bytes,8,opt,name=mount_point,json=mountPoint,proto3" json:"mount_point,omitempty"`
	// contains filtered or unexported fields
}

type PipelineResources_Disk_Type int32

type Pipeline_Docker struct {
	// Specifies the docker run information.
	Docker *DockerExecutor `protobuf:"bytes,5,opt,name=docker,proto3,oneof"`
}

type PipelinesV1Alpha2Client interface {
	// Creates a pipeline that can be run later. Create takes a Pipeline that
	// has all fields other than `pipelineId` populated, and then returns
	// the same pipeline with `pipelineId` populated. This id can be used
	// to run the pipeline.
	//
	// Caller must have WRITE permission to the project.
	CreatePipeline(ctx context.Context, in *CreatePipelineRequest, opts ...grpc.CallOption) (*Pipeline, error)
	// Runs a pipeline. If `pipelineId` is specified in the request, then
	// run a saved pipeline. If `ephemeralPipeline` is specified, then run
	// that pipeline once without saving a copy.
	//
	// The caller must have READ permission to the project where the pipeline
	// is stored and WRITE permission to the project where the pipeline will be
	// run, as VMs will be created and storage will be used.
	RunPipeline(ctx context.Context, in *RunPipelineRequest, opts ...grpc.CallOption) (*longrunning.Operation, error)
	// Retrieves a pipeline based on ID.
	//
	// Caller must have READ permission to the project.
	GetPipeline(ctx context.Context, in *GetPipelineRequest, opts ...grpc.CallOption) (*Pipeline, error)
	// Lists pipelines.
	//
	// Caller must have READ permission to the project.
	ListPipelines(ctx context.Context, in *ListPipelinesRequest, opts ...grpc.CallOption) (*ListPipelinesResponse, error)
	// Deletes a pipeline based on ID.
	//
	// Caller must have WRITE permission to the project.
	DeletePipeline(ctx context.Context, in *DeletePipelineRequest, opts ...grpc.CallOption) (*emptypb.Empty, error)
	// Gets controller configuration information. Should only be called
	// by VMs created by the Pipelines Service and not by end users.
	GetControllerConfig(ctx context.Context, in *GetControllerConfigRequest, opts ...grpc.CallOption) (*ControllerConfig, error)
	// Sets status of a given operation. Any new timestamps (as determined by
	// description) are appended to TimestampEvents. Should only be called by VMs
	// created by the Pipelines Service and not by end users.
	SetOperationStatus(ctx context.Context, in *SetOperationStatusRequest, opts ...grpc.CallOption) (*emptypb.Empty, error)
}

type PipelinesV1Alpha2Server interface {
	// Creates a pipeline that can be run later. Create takes a Pipeline that
	// has all fields other than `pipelineId` populated, and then returns
	// the same pipeline with `pipelineId` populated. This id can be used
	// to run the pipeline.
	//
	// Caller must have WRITE permission to the project.
	CreatePipeline(context.Context, *CreatePipelineRequest) (*Pipeline, error)
	// Runs a pipeline. If `pipelineId` is specified in the request, then
	// run a saved pipeline. If `ephemeralPipeline` is specified, then run
	// that pipeline once without saving a copy.
	//
	// The caller must have READ permission to the project where the pipeline
	// is stored and WRITE permission to the project where the pipeline will be
	// run, as VMs will be created and storage will be used.
	RunPipeline(context.Context, *RunPipelineRequest) (*longrunning.Operation, error)
	// Retrieves a pipeline based on ID.
	//
	// Caller must have READ permission to the project.
	GetPipeline(context.Context, *GetPipelineRequest) (*Pipeline, error)
	// Lists pipelines.
	//
	// Caller must have READ permission to the project.
	ListPipelines(context.Context, *ListPipelinesRequest) (*ListPipelinesResponse, error)
	// Deletes a pipeline based on ID.
	//
	// Caller must have WRITE permission to the project.
	DeletePipeline(context.Context, *DeletePipelineRequest) (*emptypb.Empty, error)
	// Gets controller configuration information. Should only be called
	// by VMs created by the Pipelines Service and not by end users.
	GetControllerConfig(context.Context, *GetControllerConfigRequest) (*ControllerConfig, error)
	// Sets status of a given operation. Any new timestamps (as determined by
	// description) are appended to TimestampEvents. Should only be called by VMs
	// created by the Pipelines Service and not by end users.
	SetOperationStatus(context.Context, *SetOperationStatusRequest) (*emptypb.Empty, error)
}

type RunPipelineArgs struct {

	// Required. The project in which to run the pipeline. The caller must have
	// WRITER access to all Google Cloud services and resources (e.g. Google
	// Compute Engine) will be used.
	ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
	// Pipeline input arguments; keys are defined in the pipeline documentation.
	// All input parameters that do not have default values  must be specified.
	// If parameters with defaults are specified here, the defaults will be
	// overridden.
	Inputs map[string]string `` /* 153-byte string literal not displayed */
	// Pipeline output arguments; keys are defined in the pipeline
	// documentation.  All output parameters of without default values
	// must be specified.  If parameters with defaults are specified
	// here, the defaults will be overridden.
	Outputs map[string]string `` /* 155-byte string literal not displayed */
	// The Google Cloud Service Account that will be used to access data and
	// services. By default, the compute service account associated with
	// `projectId` is used.
	ServiceAccount *ServiceAccount `protobuf:"bytes,4,opt,name=service_account,json=serviceAccount,proto3" json:"service_account,omitempty"`
	// This field is deprecated. Use `labels` instead. Client-specified pipeline
	// operation identifier.
	ClientId string `protobuf:"bytes,5,opt,name=client_id,json=clientId,proto3" json:"client_id,omitempty"`
	// Specifies resource requirements/overrides for the pipeline run.
	Resources *PipelineResources `protobuf:"bytes,6,opt,name=resources,proto3" json:"resources,omitempty"`
	// Required. Logging options. Used by the service to communicate results
	// to the user.
	Logging *LoggingOptions `protobuf:"bytes,7,opt,name=logging,proto3" json:"logging,omitempty"`
	// How long to keep the VM up after a failure (for example docker command
	// failed, copying input or output files failed, etc). While the VM is up, one
	// can ssh into the VM to debug. Default is 0; maximum allowed value is 1 day.
	KeepVmAliveOnFailureDuration *durationpb.Duration `` /* 153-byte string literal not displayed */
	// Labels to apply to this pipeline run. Labels will also be applied to
	// compute resources (VM, disks) created by this pipeline run. When listing
	// operations, operations can [filtered by labels]
	// [google.longrunning.ListOperationsRequest.filter].
	// Label keys may not be empty; label values may be empty. Non-empty labels
	// must be 1-63 characters long, and comply with [RFC1035]
	// (https://www.ietf.org/rfc/rfc1035.txt).
	// Specifically, the name must be 1-63 characters long and match the regular
	// expression `[a-z]([-a-z0-9]*[a-z0-9])?` which means the first
	// character must be a lowercase letter, and all following characters must be
	// a dash, lowercase letter, or digit, except the last character, which cannot
	// be a dash.
	Labels map[string]string `` /* 153-byte string literal not displayed */
	// contains filtered or unexported fields
}

type RunPipelineRequest struct {

	// Types that are assignable to Pipeline:
	//	*RunPipelineRequest_PipelineId
	//	*RunPipelineRequest_EphemeralPipeline
	Pipeline isRunPipelineRequest_Pipeline `protobuf_oneof:"pipeline"`
	// The arguments to use when running this pipeline.
	PipelineArgs *RunPipelineArgs `protobuf:"bytes,3,opt,name=pipeline_args,json=pipelineArgs,proto3" json:"pipeline_args,omitempty"`
	// contains filtered or unexported fields
}

type RunPipelineRequest_EphemeralPipeline struct {
	// A new pipeline object to run once and then delete.
	EphemeralPipeline *Pipeline `protobuf:"bytes,2,opt,name=ephemeral_pipeline,json=ephemeralPipeline,proto3,oneof"`
}

type RunPipelineRequest_PipelineId struct {
	// The already created pipeline to run.
	PipelineId string `protobuf:"bytes,1,opt,name=pipeline_id,json=pipelineId,proto3,oneof"`
}

type RuntimeMetadata struct {

	// Execution information specific to Google Compute Engine.
	ComputeEngine *ComputeEngine `protobuf:"bytes,1,opt,name=compute_engine,json=computeEngine,proto3" json:"compute_engine,omitempty"`
	// contains filtered or unexported fields
}

type ServiceAccount struct {

	// Email address of the service account. Defaults to `default`,
	// which uses the compute service account associated with the project.
	Email string `protobuf:"bytes,1,opt,name=email,proto3" json:"email,omitempty"`
	// List of scopes to be enabled for this service account on the VM.
	// The following scopes are automatically included:
	//
	// * https://www.googleapis.com/auth/compute
	// * https://www.googleapis.com/auth/devstorage.full_control
	// * https://www.googleapis.com/auth/genomics
	// * https://www.googleapis.com/auth/logging.write
	// * https://www.googleapis.com/auth/monitoring.write
	Scopes []string `protobuf:"bytes,2,rep,name=scopes,proto3" json:"scopes,omitempty"`
	// contains filtered or unexported fields
}

type SetOperationStatusRequest struct {
	OperationId     string            `protobuf:"bytes,1,opt,name=operation_id,json=operationId,proto3" json:"operation_id,omitempty"`
	TimestampEvents []*TimestampEvent `protobuf:"bytes,2,rep,name=timestamp_events,json=timestampEvents,proto3" json:"timestamp_events,omitempty"`
	ErrorCode       code.Code         `protobuf:"varint,3,opt,name=error_code,json=errorCode,proto3,enum=google.rpc.Code" json:"error_code,omitempty"`
	ErrorMessage    string            `protobuf:"bytes,4,opt,name=error_message,json=errorMessage,proto3" json:"error_message,omitempty"`
	ValidationToken uint64            `protobuf:"varint,5,opt,name=validation_token,json=validationToken,proto3" json:"validation_token,omitempty"`
	// contains filtered or unexported fields
}

type TimestampEvent struct {

	// String indicating the type of event
	Description string `protobuf:"bytes,1,opt,name=description,proto3" json:"description,omitempty"`
	// The time this event occured.
	Timestamp *timestamppb.Timestamp `protobuf:"bytes,2,opt,name=timestamp,proto3" json:"timestamp,omitempty"`
	// contains filtered or unexported fields
}

type UnimplementedPipelinesV1Alpha2Server struct {
}