pathways

func ConnectDB ¶

func ConnectDB() (*sqlx.DB, error)

Easy database connector

func GetDNA ¶

func GetDNA(pathways []pathdata, levels int) (map[string][]DNA, error)

func GetTotalPathways ¶

func GetTotalPathways(target_molecule string, levels int) ([]pathdata, error)

Recursively searches throughout the database and fetches the pathways that lead to your target compound. This query excludes any compound that occurs more than 100 times in nodes. That parameter can change, but once we start including things like NADPH, ATP, H2O, we step into combinatorial explosions. id_path shows you the chain of equations starting from the top, and path shows you the actual compoounds that build up a path, which is usually just the most significant reactants and products.

func LoadSQLFile ¶

func LoadSQLFile(path string) (string, error)

Reads and loads SQL files as string

func NameToId ¶

func NameToId(name string) (int, error)

Gets id from compound name if it exists in ark

func OrganismFilteredPathways ¶

func OrganismFilteredPathways(GBOrganism string, target_molecule string, levels int) ([]pathdata, error)

GetTotalPathways but limited to a single organism