mzidentml

package
v1.1.3 Latest Latest
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 Go to latest Published: Oct 10, 2023 License: MIT Imports: 6 Imported by: 0

Documentation

Index

Constants

This section is empty.

Variables

View Source 
var (
	ErrInvalidIdentIndex = errors.New("mzIdentML: invalid identification index")
)

Functions

This section is empty.

Types

type Identification 

type Identification struct {
	PepSeq        string
	PepID         string
	Charge        int
	ModMass       float64
	SpecID        string
	RetentionTime float64
	Cv            []cvParam
}

type MzIdentML 

type MzIdentML struct {
	// contains filtered or unexported fields
}

MzIdentML holds only the part of mzIdentML files in which we are interrested

func Read 

func Read(reader io.Reader) (MzIdentML, error)

Read reads mzIdentML content from io.reader

func (*MzIdentML) Ident 

func (m *MzIdentML) Ident(i int) (Identification, error)

Ident returns a spectrum identification from the mzIdentML file. Parameter i is the index of the identification to return. The index runs from 0 to NumIdents()-1

func (*MzIdentML) NumIdents 

func (m *MzIdentML) NumIdents() int

NumIdents returns the total number of identifications in the mzIdentML file Note that for some spectra, multiple identifications may be present The identifications can be accessed using the Ident() method, which takes an index as argument. The index runs from 0 to NumIdents()-1

Source Files

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