sortseq

package

v0.0.0-...-d334e18 Latest Latest Go to latest Published: Jun 6, 2014 License: MIT Imports: 12 Imported by: 1

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type SeqSorter struct {
	*SeqSorterOptions
	// contains filtered or unexported fields
}

func NewSeqSorter(reader io.Reader, opts *SeqSorterOptions) (*SeqSorter, error)

func (s *SeqSorter) SortSeq(seq Seq) (Seq, error)

func (s *SeqSorter) ToString() string

type SeqSorterError struct {
	Problem string
	Where   string
}

func (e *SeqSorterError) Error() string

type SeqSorterOptions struct {
	// contains filtered or unexported fields
}

func NewSeqSorterOptions(b, l, p int, checkR bool) *SeqSorterOptions

type SortKey struct {
	Locus  string
	Sample string
}

type Store struct {
	// contains filtered or unexported fields
}

Store facilitates the storage and retrieval of sorted seqs

func NewStore(fileName string) (*Store, error)

func (s *Store) AddSeq(seq Seq) error

func (s *Store) FetchSeqs(key SortKey) []Seq