cglf

package module

v0.0.0-...-d92f75b Latest Latest Go to latest Published: Jun 6, 2016 License: AGPL-3.0 Imports: 5 Imported by: 7

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Repository

github.com/abeconnelly/cglf

Links

Open Source Insights

README ¶

cglf

Compact Genome Library Format

Documentation ¶

Overview ¶

package main

Index ¶

type SGLF
- func LoadGenomeLibraryCSV(fn string) (SGLF, error)
- func (sglf *SGLF) AddGenomeLibraryCSV(fn string) error
type SGLFInfo

Constants ¶

This section is empty.

Variables ¶

This section is empty.

Functions ¶

This section is empty.

Types ¶

type SGLF ¶

type SGLF struct {

	// path, step, array of tiles
	//
	Lib     map[int]map[int][]string
	LibInfo map[int]map[int][]SGLFInfo

	MD5Lookup    map[string]SGLFInfo
	PfxTagLookup map[string]SGLFInfo
	SfxTagLookup map[string]SGLFInfo
}

func LoadGenomeLibraryCSV ¶

func LoadGenomeLibraryCSV(fn string) (SGLF, error)

func (*SGLF) AddGenomeLibraryCSV ¶

func (sglf *SGLF) AddGenomeLibraryCSV(fn string) error

type SGLFInfo ¶

type SGLFInfo struct {
	Path    int
	Step    int
	Variant int
	Span    int
}

Source Files ¶

View all Source files

Directories ¶

Path	Synopsis
src
dlug
memz
rollsum Package rollsum implements rolling checksums similar to apenwarr's bup, which is similar to librsync.	Package rollsum implements rolling checksums similar to apenwarr's bup, which is similar to librsync.
twobit Package twobit implements the 2bit compact randomly-accessible file format for storing DNA sequence data.	Package twobit implements the 2bit compact randomly-accessible file format for storing DNA sequence data.
twobit/cmd/twobit

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