svtyper

func Main ¶

func Main()

func Svtyper ¶

func Svtyper(vcf io.Reader, reference string, bam_paths []string, outdir, name string, excludeNonRef bool, removePR bool, duphold bool)

Svtyper parellelizes genotyping of the vcf and writes the the writer. p is optional. If set, then it is assumed that vcf is nil and the stdout of p will be used as the vcf.