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Constants ¶
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Functions ¶
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Types ¶
type TabixLocus ¶
type TabixLocus struct {
// contains filtered or unexported fields
}
func ChunkChrRange ¶
func ChunkChrRange(chunksize int, assembly string, chromosome string, startPos, endPos int) ([]TabixLocus, error)
ChunkChrRange allows you to split genomic data into chunks of size chunksize. Valid values for assemply are grch37 and grch38. chromosome is optional; if set, will only process that chromosome. startPos and endPos are optional and require chromosome to be set. If nonzero, chunks will only be created within their limits.
func MakeTabixLocus ¶
func MakeTabixLocus(chrom string, start, end int) TabixLocus
func TabixLociFromPath ¶
func TabixLociFromPath(filepath string) ([]TabixLocus, error)
func (TabixLocus) Chrom ¶
func (tl TabixLocus) Chrom() string
func (TabixLocus) End ¶
func (tl TabixLocus) End() uint32
func (TabixLocus) Start ¶
func (tl TabixLocus) Start() uint32
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