wwi3d_orig

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 Go to latest Published: May 2, 2022 License: BSD-3-Clause Imports: 46 Imported by: 0

README

WWI3D Orig

This is the Go replication of the original cemer (C++ emergent) version of the model.

wwi3d does deep predictive learning of 3D objects tumbling through space, with periodic saccadic eye movements, providing plenty of opportunity for prediction errors. wwi = what, where integration: both pathways combine to predict object -- where (dorsal) pathway is trained first and residual prediction error trains what pathway.

This is (an updated version of) the model described in:

  • O’Reilly, R. C., Russin, J. L., Zolfaghar, M., & Rohrlich, J. (2020). Deep Predictive Learning in Neocortex and Pulvinar. ArXiv:2006.14800 [q-Bio]. http://arxiv.org/abs/2006.14800

Install

See Emergent Wiki Install page for installation instructions -- basically you need install Go (e.g., brew install go on mac), then do go build in this directory.

Then, you need to get CU3D100_20obj_8tick4sac.tar from this google drive folder, which has the 3D rendered movies that the network is trained on. Install it as images in the directory where this code is. For example:

$ tar -xf CU3D100_20obj_8tick4sac.tar
$ mv CU3D100_20obj_8tick4sac images

(we usually have it in a centralized place and create a symbolic link, which works on the cluster too..)

Running

Just run the wwi3d executable that is built with the go build command. You can see how it processes processes input patterns, etc. It takes about 1 day to train across 32 processors on our older cluster (use go build -tags mpi to build with mpi support), so it would take about 16 days without MPI. Threading has decreasing benefits but is quite efficient for 2 threads, which is what it is configured for.

Wt Scales

cemer model

Layer: V1s

Layer: V1p
	Deep_Raw_Fm_V1s		Abs:	1	Rel:	1
	Fm_V2d		Abs:	1	Rel:	1
	Fm_V3d		Abs:	1	Rel:	0.2
	Fm_V4d		Abs:	1	Rel:	0.2
	Fm_TEOd		Abs:	1	Rel:	0.1

Layer: V1hs

Layer: V1hp
	Deep_Raw_Fm_V1hs		Abs:	1	Rel:	1
	Fm_V2d		Abs:	1	Rel:	1
	Fm_V3d		Abs:	1	Rel:	0.2
	Fm_V4d		Abs:	1	Rel:	0.2
	Fm_TEOd		Abs:	1	Rel:	0.1

Layer: V2s
	Fm_V1hs		Abs:	1	Rel:	1
	Fm_V1s		Abs:	1	Rel:	1
	Fm_LIPs		Abs:	1	Rel:	0.5
	Fm_V3s		Abs:	1	Rel:	0.5
	Fm_V4s		Abs:	1	Rel:	0.1
	Fm_TEOd		Abs:	1	Rel:	0.1
	Fm_V1hp		Abs:	1	Rel:	0.02
	Fm_V1p		Abs:	1	Rel:	0.02

Layer: V2d
	Ctxt_Fm_V2s		Abs:	1	Rel:	0.5
	Fm_V1hp		Abs:	1	Rel:	0.2
	Fm_V1p		Abs:	1	Rel:	0.2
	Fm_LIPd		Abs:	1	Rel:	1
	Fm_LIPp		Abs:	1	Rel:	0.2
	Fm_V3d		Abs:	1	Rel:	0.5
	Fm_V4d		Abs:	1	Rel:	0.5
	Fm_V3s		Abs:	1	Rel:	0.5
	Fm_TEOs		Abs:	1	Rel:	0.5

Layer: MtPos
	Fm_V1s		Abs:	1	Rel:	1

Layer: LIPs
	Fm_MtPos		Abs:	1	Rel:	0.5
	Fm_ObjVel		Abs:	1	Rel:	1
	Fm_SaccadePlan		Abs:	1	Rel:	1
	Fm_EyePos		Abs:	1	Rel:	1
	Fm_LIPp		Abs:	1	Rel:	0.2
	Fm_V2s		Abs:	1	Rel:	0.1
	Fm_V3s		Abs:	1	Rel:	0.1

Layer: LIPd
	Ctxt_Fm_LIPs		Abs:	1	Rel:	1
	Fm_LIPp		Abs:	1	Rel:	0.2
	Fm_ObjVel		Abs:	1	Rel:	1
	Fm_Saccade		Abs:	1	Rel:	1
	Fm_EyePos		Abs:	1	Rel:	1
	Fm_V2d		Abs:	1	Rel:	0.1
	Fm_V3d		Abs:	1	Rel:	0.1

Layer: LIPp
	Deep_Raw_Fm_MtPos		Abs:	1	Rel:	1
	Fm_LIPd		Abs:	1	Rel:	1

Layer: EyePos

Layer: SaccadePlan

Layer: Saccade

Layer: ObjVel

Layer: V3s
	Fm_V2s		Abs:	0.5	Rel:	2
	Fm_V4s		Abs:	1	Rel:	0.2
	Fm_TEOs		Abs:	1	Rel:	0.1
	Fm_DPs		Abs:	1	Rel:	0.2
	Fm_LIPs		Abs:	1	Rel:	0.1
	Fm_V1hp		Abs:	1	Rel:	0.2
	Fm_V1p		Abs:	1	Rel:	0.2
	Fm_DPp		Abs:	1	Rel:	0.05
	Fm_TEOd		Abs:	1	Rel:	0.1

Layer: V3d
	Ctxt_Fm_V3s		Abs:	1	Rel:	1
	Fm_V1hp		Abs:	1	Rel:	0.2
	Fm_V1p		Abs:	1	Rel:	0.2
	Fm_DPp		Abs:	1	Rel:	0.2
	Fm_LIPd		Abs:	1	Rel:	0.2
	Fm_DPd		Abs:	1	Rel:	0.2
	Fm_V4d		Abs:	1	Rel:	0.2
	Fm_V4s		Abs:	1	Rel:	0.2
	Fm_DPs		Abs:	1	Rel:	0.2
	Fm_TEOs		Abs:	1	Rel:	0.5

Layer: V3p
	Deep_Raw_Fm_V3s		Abs:	1	Rel:	1
	Fm_V2d		Abs:	1	Rel:	0.5
	Fm_DPd		Abs:	1	Rel:	0.2
	Fm_TEOd		Abs:	1	Rel:	0.1

Layer: DPs
	Fm_V2s		Abs:	1	Rel:	1
	Fm_V3s		Abs:	1	Rel:	1
	Fm_TEOs		Abs:	1	Rel:	0.1
	Fm_V1hp		Abs:	1	Rel:	0.2
	Fm_V1p		Abs:	1	Rel:	0.2
	Fm_V3p		Abs:	1	Rel:	0.1
	Fm_TEOp		Abs:	1	Rel:	0.1

Layer: DPd
	Ctxt_Fm_DPs		Abs:	1	Rel:	3
	Fm_V1hp		Abs:	1	Rel:	0.2
	Fm_V1p		Abs:	1	Rel:	0.2
	Fm_DPp		Abs:	1	Rel:	0.05
	Fm_TEOd		Abs:	1	Rel:	0.2

Layer: DPp
	Deep_Raw_Fm_DPs		Abs:	1	Rel:	1
	Fm_V2d		Abs:	1	Rel:	0.2
	Fm_V3d		Abs:	1	Rel:	0.5
	Fm_DPd		Abs:	1	Rel:	0.2
	Fm_TEOd		Abs:	1	Rel:	0.2

Layer: V4s
	Fm_V2s		Abs:	0.5	Rel:	2
	Fm_TEOs		Abs:	1	Rel:	0.1
	Fm_V1hp		Abs:	1	Rel:	0.2
	Fm_V1p		Abs:	1	Rel:	0.2

Layer: V4d
	Ctxt_Fm_V4s		Abs:	1	Rel:	4
	Fm_V1hp		Abs:	1	Rel:	0.2
	Fm_V1p		Abs:	1	Rel:	0.2
	Fm_V4p		Abs:	1	Rel:	0.05
	Fm_TEOd		Abs:	1	Rel:	0.2
	Fm_TEd		Abs:	1	Rel:	0.2
	Fm_TEOs		Abs:	1	Rel:	0.2

Layer: V4p
	Deep_Raw_Fm_V4s		Abs:	1	Rel:	1
	Fm_V2d		Abs:	1	Rel:	0.5
	Fm_V3d		Abs:	1	Rel:	0.5
	Fm_V4d		Abs:	1	Rel:	0.2
	Fm_TEOd		Abs:	1	Rel:	0.2

Layer: TEOs
	Fm_V4s		Abs:	1	Rel:	1
	Fm_V1hp		Abs:	1	Rel:	0.1
	Fm_V1p		Abs:	1	Rel:	0.1
	Fm_TEs		Abs:	1	Rel:	0.05

Layer: TEOd
	Ctxt_Fm_TEOs		Abs:	1	Rel:	4
	Ctxt_Fm_TEOd		Abs:	1	Rel:	4
	Fm_V1hp		Abs:	1	Rel:	0.1
	Fm_V1p		Abs:	1	Rel:	0.1
	Fm_V4p		Abs:	1	Rel:	0.2
	Fm_TEOp		Abs:	1	Rel:	0.05
	Fm_TEp		Abs:	1	Rel:	0.05
	Fm_TEd		Abs:	1	Rel:	0.1

Layer: TEOp
	Deep_Raw_Fm_TEOs		Abs:	1	Rel:	1
	Fm_V3d		Abs:	1	Rel:	0.2
	Fm_V4d		Abs:	1	Rel:	0.5
	Fm_TEOd		Abs:	1	Rel:	0.2
	Fm_TEd		Abs:	1	Rel:	0.5

Layer: TEs
	Fm_TEOs		Abs:	1	Rel:	1
	Fm_V1hp		Abs:	1	Rel:	0.1
	Fm_V1p		Abs:	1	Rel:	0.1

Layer: TEd
	Ctxt_Fm_TEs		Abs:	1	Rel:	4
	Ctxt_Fm_TEd		Abs:	1	Rel:	4
	Fm_V1hp		Abs:	1	Rel:	0.1
	Fm_V1p		Abs:	1	Rel:	0.1
	Fm_V4p		Abs:	1	Rel:	0.2
	Fm_TEOp		Abs:	1	Rel:	0.2
	Fm_TEp		Abs:	1	Rel:	0.05
	Fm_TEOd		Abs:	1	Rel:	0.1

Layer: TEp
	Deep_Raw_Fm_TEs		Abs:	1	Rel:	1
	Fm_V4d		Abs:	1	Rel:	0.5
	Fm_TEOd		Abs:	1	Rel:	0.2
	Fm_TEd		Abs:	1	Rel:	0.2

Layer: ObjIdTE
	Fm_TEs		Abs:	1	Rel:	1
	Fm_TEd		Abs:	1	Rel:	1

Layer: ObjIdTEO
	Fm_TEOs		Abs:	1	Rel:	1
	Fm_TEOd		Abs:	1	Rel:	1

Layer: ObjIdV4
	Fm_V4s		Abs:	1	Rel:	1
	Fm_V4d		Abs:	1	Rel:	1

Layer: ObjIdDP
	Fm_DPs		Abs:	1	Rel:	1
	Fm_DPd		Abs:	1	Rel:	1

Layer: ObjIdV3
	Fm_V3s		Abs:	1	Rel:	1
	Fm_V3d		Abs:	1	Rel:	1

Layer: ObjIdV2
	Fm_V2s		Abs:	1	Rel:	1

Layer: ObjIdV1
	Fm_V1s		Abs:	1	Rel:	1

Layer: ObjPosTEO
	Fm_TEOs		Abs:	1	Rel:	1
	Fm_TEOd		Abs:	1	Rel:	1

Layer: ObjPosV4
	Fm_V4s		Abs:	1	Rel:	1
	Fm_V4d		Abs:	1	Rel:	1

Layer: ObjPosDP
	Fm_DPs		Abs:	1	Rel:	1
	Fm_DPd		Abs:	1	Rel:	1

Go model


Layer: V1m

Layer: V1h

Layer: LIP
	              LIPPToLIP		Abs:	1	Rel:	0.2
	             MTPosToLIP		Abs:	1	Rel:	0.5
	            EyePosToLIP		Abs:	1	Rel:	1
	           SacPlanToLIP		Abs:	1	Rel:	1
	            ObjVelToLIP		Abs:	1	Rel:	1
	                V2ToLIP		Abs:	1	Rel:	0.1

Layer: LIPCT
	             LIPToLIPCT		Abs:	1	Rel:	1
	            LIPPToLIPCT		Abs:	1	Rel:	0.2
	          EyePosToLIPCT		Abs:	1	Rel:	1
	         SaccadeToLIPCT		Abs:	1	Rel:	1
	          ObjVelToLIPCT		Abs:	1	Rel:	1
	            V2CTToLIPCT		Abs:	1	Rel:	0.1
	            V3CTToLIPCT		Abs:	1	Rel:	0.1

Layer: LIPP
	            LIPCTToLIPP		Abs:	1	Rel:	1

Layer: MTPos
	             V1mToMTPos		Abs:	1	Rel:	1

Layer: EyePos

Layer: SacPlan

Layer: Saccade

Layer: ObjVel

Layer: V1hP
	             V2CTToV1hP		Abs:	1	Rel:	1
	             V3CTToV1hP		Abs:	1	Rel:	0.2
	             V4CTToV1hP		Abs:	1	Rel:	0.2
	            TEOCTToV1hP		Abs:	1	Rel:	0.1

Layer: V1mP
	             V2CTToV1mP		Abs:	1	Rel:	1
	             V3CTToV1mP		Abs:	1	Rel:	0.2
	             V4CTToV1mP		Abs:	1	Rel:	0.2
	            TEOCTToV1mP		Abs:	1	Rel:	0.1

Layer: V2
	                V1mToV2		Abs:	1	Rel:	1
	                V1hToV2		Abs:	1	Rel:	1
	                 V4ToV2		Abs:	1	Rel:	0.1
	                 V3ToV2		Abs:	1	Rel:	0.5
	               V1mPToV2		Abs:	1	Rel:	0.02
	               V1hPToV2		Abs:	1	Rel:	0.02
	                LIPToV2		Abs:	1	Rel:	0.5
	              TEOCTToV2		Abs:	1	Rel:	0.1

Layer: V2CT
	               V2ToV2CT		Abs:	1	Rel:	0.5
	             V1mPToV2CT		Abs:	1	Rel:	0.2
	             V1hPToV2CT		Abs:	1	Rel:	0.2
	            LIPCTToV2CT		Abs:	1	Rel:	1
	             LIPPToV2CT		Abs:	1	Rel:	0.2
	             V3CTToV2CT		Abs:	1	Rel:	0.5
	             V4CTToV2CT		Abs:	1	Rel:	0.5
	               V3ToV2CT		Abs:	1	Rel:	0.5
	              TEOToV2CT		Abs:	1	Rel:	0.5

Layer: V3
	                 V2ToV3		Abs:	0.5	Rel:	2
	                 DPToV3		Abs:	1	Rel:	0.2
	                 V4ToV3		Abs:	1	Rel:	0.2
	                LIPToV3		Abs:	1	Rel:	0.1
	                TEOToV3		Abs:	1	Rel:	0.1
	              TEOCTToV3		Abs:	1	Rel:	0.1
	               V1mPToV3		Abs:	1	Rel:	0.2
	               V1hPToV3		Abs:	1	Rel:	0.2
	                DPPToV3		Abs:	1	Rel:	0.05

Layer: V3CT
	               V3ToV3CT		Abs:	1	Rel:	1
	            LIPCTToV3CT		Abs:	1	Rel:	0.2
	             DPCTToV3CT		Abs:	1	Rel:	0.2
	             V4CTToV3CT		Abs:	1	Rel:	0.2
	               DPToV3CT		Abs:	1	Rel:	0.2
	               V4ToV3CT		Abs:	1	Rel:	0.2
	              TEOToV3CT		Abs:	1	Rel:	0.5
	             V1mPToV3CT		Abs:	1	Rel:	0.2
	             V1hPToV3CT		Abs:	1	Rel:	0.2
	              DPPToV3CT		Abs:	1	Rel:	0.2
	            LIPCTToV3CT		Abs:	1	Rel:	0.2

Layer: V3P
	              V2CTToV3P		Abs:	1	Rel:	0.5
	              DPCTToV3P		Abs:	1	Rel:	0.2
	             TEOCTToV3P		Abs:	1	Rel:	0.1

Layer: DP
	                 V3ToDP		Abs:	1	Rel:	1
	                 V2ToDP		Abs:	1	Rel:	1
	                TEOToDP		Abs:	1	Rel:	0.1
	               V1mPToDP		Abs:	1	Rel:	0.2
	               V1hPToDP		Abs:	1	Rel:	0.2
	                V3PToDP		Abs:	1	Rel:	0.1
	               TEOPToDP		Abs:	1	Rel:	0.1

Layer: DPCT
	               DPToDPCT		Abs:	1	Rel:	3
	              DPPToDPCT		Abs:	1	Rel:	0.05
	            TEOCTToDPCT		Abs:	1	Rel:	0.2
	             V1mPToDPCT		Abs:	1	Rel:	0.2
	             V1hPToDPCT		Abs:	1	Rel:	0.2

Layer: DPP
	              DPCTToDPP		Abs:	1	Rel:	0.2
	              V2CTToDPP		Abs:	1	Rel:	0.2
	              V3CTToDPP		Abs:	1	Rel:	0.5
	             TEOCTToDPP		Abs:	1	Rel:	0.2

Layer: V4
	                 V2ToV4		Abs:	0.5	Rel:	2
	                TEOToV4		Abs:	1	Rel:	0.1
	               V1mPToV4		Abs:	1	Rel:	0.2
	               V1hPToV4		Abs:	1	Rel:	0.2

Layer: V4CT
	               V4ToV4CT		Abs:	1	Rel:	4
	              V4PToV4CT		Abs:	1	Rel:	0.05
	            TEOCTToV4CT		Abs:	1	Rel:	0.2
	             TECTToV4CT		Abs:	1	Rel:	0.2
	              TEOToV4CT		Abs:	1	Rel:	0.2
	             V1mPToV4CT		Abs:	1	Rel:	0.2
	             V1hPToV4CT		Abs:	1	Rel:	0.2

Layer: V4P
	              V4CTToV4P		Abs:	1	Rel:	0.2
	              V2CTToV4P		Abs:	1	Rel:	0.5
	              V3CTToV4P		Abs:	1	Rel:	0.5
	             TEOCTToV4P		Abs:	1	Rel:	0.2

Layer: TEO
	                V4ToTEO		Abs:	1	Rel:	1
	                TEToTEO		Abs:	1	Rel:	0.05
	              V1mPToTEO		Abs:	1	Rel:	0.1
	              V1hPToTEO		Abs:	1	Rel:	0.1

Layer: TEOCT
	             TEOToTEOCT		Abs:	1	Rel:	4
	            TEOPToTEOCT		Abs:	1	Rel:	0.05
	           TEOCTToTEOCT		Abs:	1	Rel:	4
	            TECTToTEOCT		Abs:	1	Rel:	0.1
	             V4PToTEOCT		Abs:	1	Rel:	0.2
	             TEPToTEOCT		Abs:	1	Rel:	0.05
	            V1mPToTEOCT		Abs:	1	Rel:	0.1
	            V1hPToTEOCT		Abs:	1	Rel:	0.1

Layer: TEOP
	            TEOCTToTEOP		Abs:	1	Rel:	0.2
	             V3CTToTEOP		Abs:	1	Rel:	0.2
	             V4CTToTEOP		Abs:	1	Rel:	0.5
	             TECTToTEOP		Abs:	1	Rel:	0.5

Layer: TE
	                TEOToTE		Abs:	1	Rel:	1
	               V1mPToTE		Abs:	1	Rel:	0.1
	               V1hPToTE		Abs:	1	Rel:	0.1

Layer: TECT
	               TEToTECT		Abs:	1	Rel:	4
	              TEPToTECT		Abs:	1	Rel:	0.05
	             TECTToTECT		Abs:	1	Rel:	4
	            TEOCTToTECT		Abs:	1	Rel:	0.1
	              V4PToTECT		Abs:	1	Rel:	0.2
	             TEOPToTECT		Abs:	1	Rel:	0.2
	             V1mPToTECT		Abs:	1	Rel:	0.1
	             V1hPToTECT		Abs:	1	Rel:	0.1

Layer: TEP
	              TECTToTEP		Abs:	1	Rel:	0.2
	              V4CTToTEP		Abs:	1	Rel:	0.5
	             TEOCTToTEP		Abs:	1	Rel:	0.2

Documentation

Overview

wwi3d does deep predictive learning of 3D objects tumbling through space, with periodic saccadic eye movements, providing plenty of opportunity for prediction errors. wwi = what, where integration: both pathways combine to predict object -- *where* (dorsal) pathway is trained first and residual prediction error trains *what* pathway.

Source Files

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