Documentation ¶
Index ¶
- Variables
- func ConvertCmdRunOptions(cmd *cobra.Command, args []string)
- func Execute()
- func RandCmdRunOptions(cmd *cobra.Command, args []string)
- func RangeCmdRunOptions(cmd *cobra.Command, args []string)
- func StatCmdRunOptions(cmd *cobra.Command, args []string)
- func StatDfCmdOptions(cmd *cobra.Command, args []string)
- func StatFnCmdOptions(cmd *cobra.Command, args []string)
- type ConvertClisT
- type PlotClisT
- type RandClisT
- type RangeClisT
- type RootClisT
- type StatClisT
- type StatDfClisT
- type StatFnClisT
Constants ¶
This section is empty.
Variables ¶
var ConvertCmd = &cobra.Command{ Use: "cvrt [xml1, xml2, ...]", Short: "Convert related functions.", Long: `Convert related functions.`, Run: func(cmd *cobra.Command, args []string) { ConvertCmdRunOptions(cmd, args) }, }
ConvertCmd is the command line of bioctl Convert
var FmtClis = gfmt.ClisT{}
FmtClis is the parameters to run FmtCmd
var FmtCmd = &cobra.Command{ Use: "fmt [input1 input2]", Short: "A set of format (fmt) command.", Long: `A set of format (fmt) command.`, Run: func(cmd *cobra.Command, args []string) { fmtCmdRunOptions(cmd, args) }, }
FmtCmd is the command line cobra object for basic re-format
var ParClis par.ClisT
ParClis is the parameters to run par.Tasks
var ParCmd = &cobra.Command{ Use: "par", Short: "Run parallel tasks.", Long: `Run parallel tasks.`, Run: func(cmd *cobra.Command, args []string) { ParClis.Verbose = rootClis.Verbose ParClis.SaveLog = rootClis.SaveLog ParClis.TaskID = rootClis.TaskID ParClis.LogDir = rootClis.LogDir parCmdRunOptions(cmd, args) }, }
ParCmd is the command line of bioctl par
var PlotCmd = &cobra.Command{ Use: "plot", Short: "Plots related functions.", Long: `Plots related functions.`, Run: func(cmd *cobra.Command, args []string) { plotCmdRunOptions(cmd, args) }, }
PlotCmd is the command line of bioctl plot
var RandCmd = &cobra.Command{ Use: "rand", Short: "Functions related to random events.", Long: `Functions related to random events.`, Run: func(cmd *cobra.Command, args []string) { RandCmdRunOptions(cmd, args) }, }
RandCmd is the command line of bioctl Rand
var RangeCmd = &cobra.Command{ Use: "range [start end step]", Short: "Functions to manipulate intervals.", Long: `Functions to manipulate intervals.`, Run: func(cmd *cobra.Command, args []string) { RangeCmdRunOptions(cmd, args) }, }
RangeCmd is the command line of bioctl Range
var StatCmd = &cobra.Command{ Use: "stat", Short: "Functions related to stat.", Long: `Functions related to stat.`, Run: func(cmd *cobra.Command, args []string) { StatCmdRunOptions(cmd, args) if rootClis.HelpFlags { cmd.Help() } }, }
StatCmd is the command line of bioctl Stat
var StatDfCmd = &cobra.Command{ Use: "statdf", Short: "Functions related to stat data.frame.", Long: `Functions related to stat data.frame.`, Run: func(cmd *cobra.Command, args []string) { StatDfCmdOptions(cmd, args) if rootClis.HelpFlags { cmd.Help() } }, }
StatDfCmd is the command line of bioctl statdf
var StatFnClis = StatFnClisT{}
StatFnClis is the parameters to run StatFnCmd
var StatFnCmd = &cobra.Command{ Use: "statfn", Short: "Functions related to stat file.", Long: `Functions related to stat file.`, Run: func(cmd *cobra.Command, args []string) { StatFnCmdOptions(cmd, args) if rootClis.HelpFlags { cmd.Help() } }, }
StatFnCmd is the command line of bioctl statfn
Functions ¶
func ConvertCmdRunOptions ¶
func RandCmdRunOptions ¶
func RangeCmdRunOptions ¶
func StatCmdRunOptions ¶
func StatDfCmdOptions ¶
func StatFnCmdOptions ¶
Types ¶
type ConvertClisT ¶
ConvertClisT is the type to run bioctl Convert
var ConvertClis ConvertClisT
ConvertClis is the parameters to run par.Tasks
type PlotClisT ¶
PlotClisT is the type to run bioctl plot
var PlotClis PlotClisT
PlotClis is the parameters to run par.Tasks
type RandClisT ¶
RandClisT is the type to run bioctl Rand
var RandClis RandClisT
RandClis is the parameters to run par.Tasks
type RangeClisT ¶
type RangeClisT struct { Start float64 StartChar string EndChar string End float64 Step float64 RefSequence string Sep string Mode string }
RangeClisT is the type to run bioctl Range
var RangeClis RangeClisT
RangeClis is the parameters to run par.Tasks
type RootClisT ¶
type RootClisT struct { // version of bioctl Version string Verbose int SaveLog bool TaskID string LogDir string Clean bool Out string Thread int Uncompress string HelpFlags bool }
RootClisT is the bioctl global flags
type StatClisT ¶
type StatClisT struct { Max bool Min bool Median bool Mean bool Mfreq bool Variance bool Sum bool Pearson bool Percentile float64 Freq bool CuSum bool GeometricMean bool HarmonicMean bool Entropy bool Covariance bool SplitArgs string }
StatClisT is the type to run bioctl Stat
var StatClis StatClisT
StatClis is the parameters to run stat
type StatDfClisT ¶
StatDfClisT is the type to run bioctl statdf
var StatDfClis StatDfClisT
StatDfClis is the parameters to run statdf