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v0.0.0-...-d115bb8 Latest Latest Go to latest Published: Oct 25, 2018 License: BSD-3-Clause Imports: 11 Imported by: 0

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Repository

github.com/craiglowe/gonomics

Links

Open Source Insights

Documentation ¶

Index ¶

func AffineGap(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapOpen int64, ...) (int64, []cigar)
func AffineGapChunk(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapOpen int64, ...) (int64, []cigar)
func AllSeqAffine(records []fasta.Fasta) []fasta.Fasta
func AllSeqAffineChunk(records []fasta.Fasta, chunkSize int) []fasta.Fasta
func ConstGap(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapPen int64) (int64, []cigar)
func DrawAlignedChunks(aln []fasta.Fasta, chunkSize int, chunkPixelWidth int, chunkPixelHeight int, ...) (*image.RGBA, error)
func View(alpha []dna.Base, beta []dna.Base, operations []cigar) string

Constants ¶

This section is empty.

Variables ¶

This section is empty.

Functions ¶

func AffineGap ¶

func AffineGap(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapOpen int64, gapExtend int64) (int64, []cigar)

func AffineGapChunk ¶

func AffineGapChunk(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapOpen int64, gapExtend int64, chunkSize int64) (int64, []cigar)

func AllSeqAffine ¶

func AllSeqAffine(records []fasta.Fasta) []fasta.Fasta

func AllSeqAffineChunk ¶

func AllSeqAffineChunk(records []fasta.Fasta, chunkSize int) []fasta.Fasta

func ConstGap ¶

func ConstGap(alpha []dna.Base, beta []dna.Base, scores [5][5]int64, gapPen int64) (int64, []cigar)

func DrawAlignedChunks ¶

func DrawAlignedChunks(aln []fasta.Fasta, chunkSize int, chunkPixelWidth int, chunkPixelHeight int, border int, seqPixelSpacing int) (*image.RGBA, error)

func View ¶

func View(alpha []dna.Base, beta []dna.Base, operations []cigar) string

Types ¶

This section is empty.

Source Files ¶

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