datasource

package
v0.0.0-...-fc26a1d Latest Latest
Warning

This package is not in the latest version of its module.

 Go to latest Published: Oct 14, 2023 License: BSD-2-Clause Imports: 21 Imported by: 0

Documentation

Index

Constants

This section is empty.

Variables

This section is empty.

Functions

This section is empty.

Types

type Annotation 

type Annotation struct {
	Client annotation.TaggedAnnotationServiceClient
}

func (*Annotation) GetBasicStrainInfo 

func (an *Annotation) GetBasicStrainInfo(strains []*stock.Strain) ([][]string, error)

func (*Annotation) GetPlasmidInv 

func (an *Annotation) GetPlasmidInv(plasmids []*stock.Plasmid) ([][]string, error)

func (*Annotation) GetStrainInfo 

func (an *Annotation) GetStrainInfo(strains []*stock.Strain) ([][]string, error)

func (*Annotation) GetStrainInv 

func (an *Annotation) GetStrainInv(strains []*stock.Strain) ([][]string, error)

type GraphqlAuthor 

type GraphqlAuthor struct {
	FirstName string `graphql:"first_name"`
	LastName  string `graphql:"last_name"`
	Initials  string
	Rank      string
}

func (*GraphqlAuthor) FullName 

func (agl *GraphqlAuthor) FullName() string

type PubInfo 

type PubInfo struct {
	AuthorStr string
	PubmedURL string
	DoiURL    string
}

type PubQuery 

type PubQuery struct {
	Publication struct {
		Id      string
		PubDate time.Time `graphql:"pub_date"`
		Doi     string
		Authors []*GraphqlAuthor
	} `graphql:"publication(id: $id)"`
}

type Publication 

type Publication struct {
	// contains filtered or unexported fields
}

func NewPublication 

func NewPublication(base string) *Publication

func (*Publication) ParsedInfo 

func (p *Publication) ParsedInfo(id string) (*PubInfo, error)

func (*Publication) ParsedInfoFromGraphql 

func (p *Publication) ParsedInfoFromGraphql(id string) (*PubInfo, error)

type Sources 

type Sources struct {
	AnnoSource  *Annotation
	StockSource *Stock
	UserSource  *User
	PubSource   *Publication
}

func GrpcSources 

func GrpcSources(mc map[string]*grpc.ClientConn) *Sources

type Stock 

type Stock struct {
	Client stock.StockServiceClient
}

func (*Stock) GetBasicPlasmidInfo 

func (st *Stock) GetBasicPlasmidInfo(plasmids []*stock.Plasmid) ([][]string, error)

func (*Stock) GetPlasmids 

func (st *Stock) GetPlasmids(ids []string) ([]*stock.Plasmid, error)

func (*Stock) GetStrains 

func (st *Stock) GetStrains(ids []string) ([]*stock.Strain, error)

func (*Stock) StocksFromItems 

func (st *Stock) StocksFromItems(ord *order.Order, pattern string) []string

type StockServiceClient 

type StockServiceClient struct {
	mock.Mock
}

StockServiceClient is an autogenerated mock type for the StockServiceClient type

func (*StockServiceClient) CreatePlasmid 

func (_m *StockServiceClient) CreatePlasmid(ctx context.Context, in *stock.NewPlasmid, opts ...grpc.CallOption) (*stock.Plasmid, error)

CreatePlasmid provides a mock function with given fields: ctx, in, opts

func (*StockServiceClient) CreateStrain 

func (_m *StockServiceClient) CreateStrain(ctx context.Context, in *stock.NewStrain, opts ...grpc.CallOption) (*stock.Strain, error)

CreateStrain provides a mock function with given fields: ctx, in, opts

func (*StockServiceClient) GetPlasmid 

func (_m *StockServiceClient) GetPlasmid(ctx context.Context, in *stock.StockId, opts ...grpc.CallOption) (*stock.Plasmid, error)

GetPlasmid provides a mock function with given fields: ctx, in, opts

func (*StockServiceClient) GetStrain 

func (_m *StockServiceClient) GetStrain(ctx context.Context, in *stock.StockId, opts ...grpc.CallOption) (*stock.Strain, error)

GetStrain provides a mock function with given fields: ctx, in, opts

func (*StockServiceClient) ListPlasmids 

func (_m *StockServiceClient) ListPlasmids(ctx context.Context, in *stock.StockParameters, opts ...grpc.CallOption) (*stock.PlasmidCollection, error)

ListPlasmids provides a mock function with given fields: ctx, in, opts

func (*StockServiceClient) ListStrains 

func (_m *StockServiceClient) ListStrains(ctx context.Context, in *stock.StockParameters, opts ...grpc.CallOption) (*stock.StrainCollection, error)

ListStrains provides a mock function with given fields: ctx, in, opts

func (*StockServiceClient) LoadPlasmid 

func (_m *StockServiceClient) LoadPlasmid(ctx context.Context, in *stock.ExistingPlasmid, opts ...grpc.CallOption) (*stock.Plasmid, error)

LoadPlasmid provides a mock function with given fields: ctx, in, opts

func (*StockServiceClient) LoadStrain 

func (_m *StockServiceClient) LoadStrain(ctx context.Context, in *stock.ExistingStrain, opts ...grpc.CallOption) (*stock.Strain, error)

LoadStrain provides a mock function with given fields: ctx, in, opts

func (*StockServiceClient) RemoveStock 

func (_m *StockServiceClient) RemoveStock(ctx context.Context, in *stock.StockId, opts ...grpc.CallOption) (*empty.Empty, error)

RemoveStock provides a mock function with given fields: ctx, in, opts

func (*StockServiceClient) UpdatePlasmid 

func (_m *StockServiceClient) UpdatePlasmid(ctx context.Context, in *stock.PlasmidUpdate, opts ...grpc.CallOption) (*stock.Plasmid, error)

UpdatePlasmid provides a mock function with given fields: ctx, in, opts

func (*StockServiceClient) UpdateStrain 

func (_m *StockServiceClient) UpdateStrain(ctx context.Context, in *stock.StrainUpdate, opts ...grpc.CallOption) (*stock.Strain, error)

UpdateStrain provides a mock function with given fields: ctx, in, opts

type TaggedAnnotationServiceClient 

type TaggedAnnotationServiceClient struct {
	mock.Mock
}

TaggedAnnotationServiceClient is an autogenerated mock type for the TaggedAnnotationServiceClient type

func (*TaggedAnnotationServiceClient) AddToAnnotationGroup 

func (_m *TaggedAnnotationServiceClient) AddToAnnotationGroup(ctx context.Context, in *annotation.AnnotationGroupId, opts ...grpc.CallOption) (*annotation.TaggedAnnotationGroup, error)

AddToAnnotationGroup provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) CreateAnnotation 

func (_m *TaggedAnnotationServiceClient) CreateAnnotation(ctx context.Context, in *annotation.NewTaggedAnnotation, opts ...grpc.CallOption) (*annotation.TaggedAnnotation, error)

CreateAnnotation provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) CreateAnnotationGroup 

func (_m *TaggedAnnotationServiceClient) CreateAnnotationGroup(ctx context.Context, in *annotation.AnnotationIdList, opts ...grpc.CallOption) (*annotation.TaggedAnnotationGroup, error)

CreateAnnotationGroup provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) DeleteAnnotation 

func (_m *TaggedAnnotationServiceClient) DeleteAnnotation(ctx context.Context, in *annotation.DeleteAnnotationRequest, opts ...grpc.CallOption) (*empty.Empty, error)

DeleteAnnotation provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) DeleteAnnotationGroup 

func (_m *TaggedAnnotationServiceClient) DeleteAnnotationGroup(ctx context.Context, in *annotation.GroupEntryId, opts ...grpc.CallOption) (*empty.Empty, error)

DeleteAnnotationGroup provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) GetAnnotation 

func (_m *TaggedAnnotationServiceClient) GetAnnotation(ctx context.Context, in *annotation.AnnotationId, opts ...grpc.CallOption) (*annotation.TaggedAnnotation, error)

GetAnnotation provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) GetAnnotationGroup 

func (_m *TaggedAnnotationServiceClient) GetAnnotationGroup(ctx context.Context, in *annotation.GroupEntryId, opts ...grpc.CallOption) (*annotation.TaggedAnnotationGroup, error)

GetAnnotationGroup provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) GetAnnotationTag 

func (_m *TaggedAnnotationServiceClient) GetAnnotationTag(ctx context.Context, in *annotation.TagRequest, opts ...grpc.CallOption) (*annotation.AnnotationTag, error)

GetAnnotationTag provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) GetEntryAnnotation 

func (_m *TaggedAnnotationServiceClient) GetEntryAnnotation(ctx context.Context, in *annotation.EntryAnnotationRequest, opts ...grpc.CallOption) (*annotation.TaggedAnnotation, error)

GetEntryAnnotation provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) ListAnnotationGroups 

func (_m *TaggedAnnotationServiceClient) ListAnnotationGroups(ctx context.Context, in *annotation.ListGroupParameters, opts ...grpc.CallOption) (*annotation.TaggedAnnotationGroupCollection, error)

ListAnnotationGroups provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) ListAnnotations 

func (_m *TaggedAnnotationServiceClient) ListAnnotations(ctx context.Context, in *annotation.ListParameters, opts ...grpc.CallOption) (*annotation.TaggedAnnotationCollection, error)

ListAnnotations provides a mock function with given fields: ctx, in, opts

func (*TaggedAnnotationServiceClient) UpdateAnnotation 

func (_m *TaggedAnnotationServiceClient) UpdateAnnotation(ctx context.Context, in *annotation.TaggedAnnotationUpdate, opts ...grpc.CallOption) (*annotation.TaggedAnnotation, error)

UpdateAnnotation provides a mock function with given fields: ctx, in, opts

type User 

type User struct {
	Client user.UserServiceClient
}

func (*User) UsersInOrder 

func (u *User) UsersInOrder(ord *order.Order) (map[string]*user.User, error)

Source Files

View all Source files

Jump to

Keyboard shortcuts

? : This menu
/ : Search site
f or F : Jump to
y or Y : Canonical URL
go.dev uses cookies from Google to deliver and enhance the quality of its services and to analyze traffic. Learn more.