Documentation
¶
Overview ¶
package stockcenter is the data source for stockcenter and related data
Index ¶
Constants ¶
This section is empty.
Variables ¶
This section is empty.
Functions ¶
This section is empty.
Types ¶
type Plasmid ¶
type Plasmid struct {
Id string
Summary string
User string
CreatedOn time.Time
UpdatedOn time.Time
Name string
Publications []string
Genes []string
}
Plasmid is the container for plasmid data
type PlasmidGenbank ¶
PlasmidGenbank is the container for genbank link for plasmid
type PlasmidGenbankReader ¶
type PlasmidGenbankReader interface {
datasource.IteratorWithoutValue
Value() (*PlasmidGenbank, error)
}
PlasmidGenbankReader is the defined interface for reading the data
func NewPlasmidGenbankReader ¶
func NewPlasmidGenbankReader(r io.Reader) PlasmidGenbankReader
NewPlasmidGenbankReader is to get an instance of PlasmidGenbankReader
type PlasmidReader ¶
type PlasmidReader interface {
datasource.IteratorWithoutValue
Value() (*Plasmid, error)
}
PlasmidReader is the defined interface for reading the plasmid data
func NewCsvPlasmidReader ¶
func NewCsvPlasmidReader( r io.Reader, al StockAnnotatorLookup, pl StockPubLookup, gl StockGeneLookup, ) PlasmidReader
NewCsvPlasmidReader is to get an instance of PlasmidReader instance
type StockAnnotatorLookup ¶
type StockAnnotatorLookup interface {
StockAnnotator(id string) (string, time.Time, time.Time, bool)
}
StockAnnotatorLookup is an interface for retrieving stock annotator
func NewStockAnnotatorLookup ¶
func NewStockAnnotatorLookup(r io.Reader) (StockAnnotatorLookup, error)
type StockGeneLookup ¶
type StockGeneLookup interface {
// StockGene looks up a stock identifier and returns a slice
// with a list of gene identifiers
StockGene(id string) []string
}
func NewStockGeneLookp ¶
func NewStockGeneLookp(r io.Reader) (StockGeneLookup, error)
NewStockGeneLookp returns a struct implementing StockGeneLookup interface
type StockOrder ¶
StockOrder is the container for order data
type StockOrderReader ¶
type StockOrderReader interface {
datasource.IteratorWithoutValue
Value() (*StockOrder, error)
}
StockOrderReader is the defined interface for reading the data
func NewCsvStockOrderReader ¶
func NewCsvStockOrderReader(r io.Reader) StockOrderReader
NewCsvStockOrderReader is to get an instance of order reader
type StockPubLookup ¶
type StockPubLookup interface {
// StockPub looks up a stock identifier and returns a slice
// with a list of publication identifiers
StockPub(id string) []string
}
StockPubLookup is an interface for retrieving publication linked to a stock record
func NewStockPubLookup ¶
func NewStockPubLookup(r io.Reader) (StockPubLookup, error)
NewStockPubLookup returns an StockPubLookup implementing struct
type Strain ¶
type Strain struct {
Id string
Descriptor string
Summary string
Species string
User string
Publications []string
Genes []string
CreatedOn time.Time
UpdatedOn time.Time
}
Strain is the container for strain data
type StrainReader ¶
type StrainReader interface {
datasource.IteratorWithoutValue
Value() (*Strain, error)
}
StrainReader is the defined interface for reading the strain data
func NewCsvStrainReader ¶
func NewCsvStrainReader( r io.Reader, al StockAnnotatorLookup, pl StockPubLookup, gl StockGeneLookup, ) StrainReader
NewCsvStrainReader is to get an instance of strain reader
Source Files
Directories