genomics

package
v0.0.0-...-ada7ae8 Latest Latest
Warning

This package is not in the latest version of its module.

Go to latest
Published: Mar 10, 2016 License: BSD-3-Clause Imports: 13 Imported by: 0

Documentation

Overview

Package genomics provides access to the Genomics API.

Usage example:

import "google.golang.org/api/genomics/v1alpha2"
...
genomicsService, err := genomics.New(oauthHttpClient)

Index

Constants

View Source
const (
	// View and manage your data across Google Cloud Platform services
	CloudPlatformScope = "https://www.googleapis.com/auth/cloud-platform"

	// View and manage Genomics data
	GenomicsScope = "https://www.googleapis.com/auth/genomics"
)

OAuth2 scopes used by this API.

Variables

This section is empty.

Functions

This section is empty.

Types

type CancelOperationRequest

type CancelOperationRequest struct {
}

CancelOperationRequest: The request message for Operations.CancelOperation.

type Empty

type Empty struct {
	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`
}

Empty: A generic empty message that you can re-use to avoid defining duplicated empty messages in your APIs. A typical example is to use it as the request or the response type of an API method. For instance: service Foo { rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty); } The JSON representation for `Empty` is empty JSON object `{}`.

type ImportReadGroupSetsResponse

type ImportReadGroupSetsResponse struct {
	// ReadGroupSetIds: IDs of the read group sets that were created.
	ReadGroupSetIds []string `json:"readGroupSetIds,omitempty"`

	// ForceSendFields is a list of field names (e.g. "ReadGroupSetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`
}

ImportReadGroupSetsResponse: The read group set import response.

func (*ImportReadGroupSetsResponse) MarshalJSON

func (s *ImportReadGroupSetsResponse) MarshalJSON() ([]byte, error)

type ImportVariantsResponse

type ImportVariantsResponse struct {
	// CallSetIds: IDs of the call sets created during the import.
	CallSetIds []string `json:"callSetIds,omitempty"`

	// ForceSendFields is a list of field names (e.g. "CallSetIds") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`
}

ImportVariantsResponse: The variant data import response.

func (*ImportVariantsResponse) MarshalJSON

func (s *ImportVariantsResponse) MarshalJSON() ([]byte, error)

type ListOperationsResponse

type ListOperationsResponse struct {
	// NextPageToken: The standard List next-page token.
	NextPageToken string `json:"nextPageToken,omitempty"`

	// Operations: A list of operations that matches the specified filter in
	// the request.
	Operations []*Operation `json:"operations,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "NextPageToken") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`
}

ListOperationsResponse: The response message for Operations.ListOperations.

func (*ListOperationsResponse) MarshalJSON

func (s *ListOperationsResponse) MarshalJSON() ([]byte, error)

type Operation

type Operation struct {
	// Done: If the value is `false`, it means the operation is still in
	// progress. If true, the operation is completed, and either `error` or
	// `response` is available.
	Done bool `json:"done,omitempty"`

	// Error: The error result of the operation in case of failure.
	Error *Status `json:"error,omitempty"`

	// Metadata: An OperationMetadata object. This will always be returned
	// with the Operation.
	Metadata OperationMetadata `json:"metadata,omitempty"`

	// Name: The server-assigned name, which is only unique within the same
	// service that originally returns it. For example:
	// `operations/CJHU7Oi_ChDrveSpBRjfuL-qzoWAgEw`
	Name string `json:"name,omitempty"`

	// Response: If importing ReadGroupSets, an ImportReadGroupSetsResponse
	// is returned. If importing Variants, an ImportVariantsResponse is
	// returned. For exports, an empty response is returned.
	Response OperationResponse `json:"response,omitempty"`

	// ServerResponse contains the HTTP response code and headers from the
	// server.
	googleapi.ServerResponse `json:"-"`

	// ForceSendFields is a list of field names (e.g. "Done") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`
}

Operation: This resource represents a long-running operation that is the result of a network API call.

func (*Operation) MarshalJSON

func (s *Operation) MarshalJSON() ([]byte, error)

type OperationEvent

type OperationEvent struct {
	// Description: Required description of event.
	Description string `json:"description,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Description") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`
}

OperationEvent: An event that occurred during an Operation.

func (*OperationEvent) MarshalJSON

func (s *OperationEvent) MarshalJSON() ([]byte, error)

type OperationMetadata

type OperationMetadata interface{}

type OperationMetadata1

type OperationMetadata1 struct {
	// CreateTime: The time at which the job was submitted to the Genomics
	// service.
	CreateTime string `json:"createTime,omitempty"`

	// Events: Optional event messages that were generated during the job's
	// execution. This also contains any warnings that were generated during
	// import or export.
	Events []*OperationEvent `json:"events,omitempty"`

	// ProjectId: The Google Cloud Project in which the job is scoped.
	ProjectId string `json:"projectId,omitempty"`

	// Request: The original request that started the operation. Note that
	// this will be in current version of the API. If the operation was
	// started with v1beta2 API and a GetOperation is performed on v1 API, a
	// v1 request will be returned.
	Request OperationMetadataRequest `json:"request,omitempty"`

	// ForceSendFields is a list of field names (e.g. "CreateTime") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`
}

OperationMetadata1: Metadata describing an Operation.

func (*OperationMetadata1) MarshalJSON

func (s *OperationMetadata1) MarshalJSON() ([]byte, error)

type OperationMetadataRequest

type OperationMetadataRequest interface{}

type OperationResponse

type OperationResponse interface{}

type OperationsCancelCall

type OperationsCancelCall struct {
	// contains filtered or unexported fields
}

func (*OperationsCancelCall) Context

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsCancelCall) Do

Do executes the "genomics.operations.cancel" call. Exactly one of *Empty or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Empty.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsCancelCall) Fields

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

type OperationsGetCall

type OperationsGetCall struct {
	// contains filtered or unexported fields
}

func (*OperationsGetCall) Context

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsGetCall) Do

Do executes the "genomics.operations.get" call. Exactly one of *Operation or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *Operation.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsGetCall) Fields

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*OperationsGetCall) IfNoneMatch

func (c *OperationsGetCall) IfNoneMatch(entityTag string) *OperationsGetCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

type OperationsListCall

type OperationsListCall struct {
	// contains filtered or unexported fields
}

func (*OperationsListCall) Context

Context sets the context to be used in this call's Do method. Any pending HTTP request will be aborted if the provided context is canceled.

func (*OperationsListCall) Do

Do executes the "genomics.operations.list" call. Exactly one of *ListOperationsResponse or error will be non-nil. Any non-2xx status code is an error. Response headers are in either *ListOperationsResponse.ServerResponse.Header or (if a response was returned at all) in error.(*googleapi.Error).Header. Use googleapi.IsNotModified to check whether the returned error was because http.StatusNotModified was returned.

func (*OperationsListCall) Fields

Fields allows partial responses to be retrieved. See https://developers.google.com/gdata/docs/2.0/basics#PartialResponse for more information.

func (*OperationsListCall) Filter

func (c *OperationsListCall) Filter(filter string) *OperationsListCall

Filter sets the optional parameter "filter": A string for filtering Operations. The following filter fields are supported: * projectId: Required. Corresponds to OperationMetadata.projectId. * createTime: The time this job was created, in seconds from the [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use `>=` and/or `= 1432140000` * `projectId = my-project AND createTime >= 1432140000 AND createTime <= 1432150000 AND status = RUNNING`

func (*OperationsListCall) IfNoneMatch

func (c *OperationsListCall) IfNoneMatch(entityTag string) *OperationsListCall

IfNoneMatch sets the optional parameter which makes the operation fail if the object's ETag matches the given value. This is useful for getting updates only after the object has changed since the last request. Use googleapi.IsNotModified to check whether the response error from Do is the result of In-None-Match.

func (*OperationsListCall) PageSize

func (c *OperationsListCall) PageSize(pageSize int64) *OperationsListCall

PageSize sets the optional parameter "pageSize": The maximum number of results to return. If unspecified, defaults to 256. The maximum value is 2048.

func (*OperationsListCall) PageToken

func (c *OperationsListCall) PageToken(pageToken string) *OperationsListCall

PageToken sets the optional parameter "pageToken": The standard list page token.

func (*OperationsListCall) Pages

Pages invokes f for each page of results. A non-nil error returned from f will halt the iteration. The provided context supersedes any context provided to the Context method.

type OperationsService

type OperationsService struct {
	// contains filtered or unexported fields
}

func NewOperationsService

func NewOperationsService(s *Service) *OperationsService

func (*OperationsService) Cancel

func (r *OperationsService) Cancel(name string, canceloperationrequest *CancelOperationRequest) *OperationsCancelCall

Cancel: Starts asynchronous cancellation on a long-running operation. The server makes a best effort to cancel the operation, but success is not guaranteed. Clients may use Operations.GetOperation or Operations.ListOperations to check whether the cancellation succeeded or the operation completed despite cancellation.

func (*OperationsService) Get

Get: Gets the latest state of a long-running operation. Clients can use this method to poll the operation result at intervals as recommended by the API service.

func (*OperationsService) List

List: Lists operations that match the specified filter in the request.

type Service

type Service struct {
	BasePath  string // API endpoint base URL
	UserAgent string // optional additional User-Agent fragment

	Operations *OperationsService
	// contains filtered or unexported fields
}

func New

func New(client *http.Client) (*Service, error)

type Status

type Status struct {
	// Code: The status code, which should be an enum value of
	// google.rpc.Code.
	Code int64 `json:"code,omitempty"`

	// Details: A list of messages that carry the error details. There will
	// be a common set of message types for APIs to use.
	Details []StatusDetails `json:"details,omitempty"`

	// Message: A developer-facing error message, which should be in
	// English. Any user-facing error message should be localized and sent
	// in the google.rpc.Status.details field, or localized by the client.
	Message string `json:"message,omitempty"`

	// ForceSendFields is a list of field names (e.g. "Code") to
	// unconditionally include in API requests. By default, fields with
	// empty values are omitted from API requests. However, any non-pointer,
	// non-interface field appearing in ForceSendFields will be sent to the
	// server regardless of whether the field is empty or not. This may be
	// used to include empty fields in Patch requests.
	ForceSendFields []string `json:"-"`
}

Status: The `Status` type defines a logical error model that is suitable for different programming environments, including REST APIs and RPC APIs. It is used by [gRPC](https://github.com/grpc). The error model is designed to be: - Simple to use and understand for most users - Flexible enough to meet unexpected needs # Overview The `Status` message contains three pieces of data: error code, error message, and error details. The error code should be an enum value of google.rpc.Code, but it may accept additional error codes if needed. The error message should be a developer-facing English message that helps developers *understand* and *resolve* the error. If a localized user-facing error message is needed, put the localized message in the error details or localize it in the client. The optional error details may contain arbitrary information about the error. There is a predefined set of error detail types in the package `google.rpc` which can be used for common error conditions. # Language mapping The `Status` message is the logical representation of the error model, but it is not necessarily the actual wire format. When the `Status` message is exposed in different client libraries and different wire protocols, it can be mapped differently. For example, it will likely be mapped to some exceptions in Java, but more likely mapped to some error codes in C. # Other uses The error model and the `Status` message can be used in a variety of environments, either with or without APIs, to provide a consistent developer experience across different environments. Example uses of this error model include: - Partial errors. If a service needs to return partial errors to the client, it may embed the `Status` in the normal response to indicate the partial errors. - Workflow errors. A typical workflow has multiple steps. Each step may have a `Status` message for error reporting purpose. - Batch operations. If a client uses batch request and batch response, the `Status` message should be used directly inside batch response, one for each error sub-response. - Asynchronous operations. If an API call embeds asynchronous operation results in its response, the status of those operations should be represented directly using the `Status` message. - Logging. If some API errors are stored in logs, the message `Status` could be used directly after any stripping needed for security/privacy reasons.

func (*Status) MarshalJSON

func (s *Status) MarshalJSON() ([]byte, error)

type StatusDetails

type StatusDetails interface{}

Jump to

Keyboard shortcuts

? : This menu
/ : Search site
f or F : Jump to
y or Y : Canonical URL