fasta

package

v0.0.0-...-25502c3 Latest Latest Go to latest Published: Oct 9, 2012 License: GPL-3.0 Imports: 7 Imported by: 0

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Package to read and write FASTA format files

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const (
	DefaultIDPrefix  = ">"
	DefaultSeqPrefix = ""
)

Default delimiters.

This section is empty.

This section is empty.

type Reader struct {
	IDPrefix  []byte
	SeqPrefix []byte
	// contains filtered or unexported fields
}

Fasta sequence format reader type.

func NewReader(f io.Reader, t seqio.SequenceAppender) *Reader

Returns a new fasta format reader using f.

func (self *Reader) Read() (s seq.Sequence, err error)

Read a single sequence and return it or an error.

type Writer struct {
	IDPrefix  []byte
	SeqPrefix []byte
	Width     int
	// contains filtered or unexported fields
}

Fasta sequence format writer type.

func NewWriter(w io.Writer, width int) *Writer

Returns a new fasta format writer using f.

func (self *Writer) Write(s seqio.Sequence) (n int, err error)

Write a single sequence and return the number of bytes written and any error.