Documentation ¶
Index ¶
- Variables
- func NewBamReader(bamFile string, cfg *config.Config) (*bam.Reader, error)
- type Iterator
- type Reader
- type Record
- func (r *Record) GetBlocks() []*annotation.Location
- func (r *Record) HasMateUnmapped() bool
- func (r *Record) IsDuplicate() bool
- func (r *Record) IsFirstOfValidPair() bool
- func (r *Record) IsPaired() bool
- func (r *Record) IsPrimary() bool
- func (r *Record) IsProperlyPaired() bool
- func (r *Record) IsQCFail() bool
- func (r *Record) IsRead1() bool
- func (r *Record) IsRead2() bool
- func (r *Record) IsSplit() bool
- func (r *Record) IsUniq() bool
- func (r *Record) IsUnmapped() bool
- type RefChunk
Constants ¶
This section is empty.
Variables ¶
View Source
var ( NewTag = sam.NewTag NewAux = sam.NewAux )
Export original sam.Record functions
Functions ¶
Types ¶
type Iterator ¶
type Reader ¶
type Record ¶
func (*Record) GetBlocks ¶
func (r *Record) GetBlocks() []*annotation.Location
func (*Record) HasMateUnmapped ¶
func (*Record) IsDuplicate ¶
func (*Record) IsFirstOfValidPair ¶
func (*Record) IsProperlyPaired ¶
func (*Record) IsUnmapped ¶
Click to show internal directories.
Click to hide internal directories.