kmer

package

v0.0.0-...-a011eca Latest Latest Go to latest Published: Jun 4, 2022 License: BSD-3-Clause, GPL-2.0, BSD-3-Clause, + 1 more Imports: 2 Imported by: 0

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func CompHash(h1, h2 map[string]int) float64

func Hashseq(s string, n int) map[string]int

type HashDB struct {
	Hashes []map[string]int
	Names  []string
	K      int
}

func (hdb *HashDB) Init(seqs []wtype.BioSequence, n int)

func (hdb HashDB) SearchWith(seq wtype.BioSequence) []Hit

type Hit struct {
	Name  string
	Score float64
}

type SortableHits []Hit

func (s SortableHits) Len() int

func (s SortableHits) Less(i, j int) bool

func (s SortableHits) Swap(i, j int)