matcher

package

v0.0.1 Latest Latest Go to latest Published: Aug 4, 2020 License: MIT Imports: 10 Imported by: 0

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Repository

github.com/kazmiekr/clinvar-matcher

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Documentation ¶

Index ¶

Constants
func GenerateAssessmentReport(config ReportConfig) error
func WriteAssessedVariants(config ReportConfig, localClinvarVcfPath string, localSubmissionPath string) error
type ReportConfig

Constants ¶

View Source

const (
	SnpediaLinkPattern = "https://www.snpedia.com/index.php/%s"
	DbSNPLinkPattern   = "https://www.ncbi.nlm.nih.gov/snp/%s"
	ClinvarLinkPattern = "https://www.ncbi.nlm.nih.gov/clinvar/variation/%s/"
	PassFilter         = "pass"
)

Variables ¶

This section is empty.

Functions ¶

func GenerateAssessmentReport ¶

func GenerateAssessmentReport(config ReportConfig) error

func WriteAssessedVariants ¶

func WriteAssessedVariants(config ReportConfig, localClinvarVcfPath string, localSubmissionPath string) error

Types ¶

type ReportConfig ¶

type ReportConfig struct {
	SourceVcfPath         string
	OutputFile            string
	ClinvarVcfPath        string
	ClinvarSubmissionPath string
	IncludeAllVariants    bool
	SaveDownloads         bool
}

Source Files ¶

View all Source files

match.go

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