dbgenes

package

v0.0.0-...-40008dc Latest Latest Go to latest Published: Jun 11, 2022 License: MIT Imports: 11 Imported by: 0

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Repository

github.com/knightjdr/cmgo

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README ¶

Module name: `analysis-dbgenes`

Generates a txt file of official genes used for SAINT

parameters	definition	default
uniprotdb	Uniprot Swiss-Prot database
outFile	output list of gene names	db-genes.txt

Example file formats

Download Uniprot file from: ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2018_03/knowledgebase/uniprot_sprot-only2018_03.tar.gz

Unzip folder and use .dat file.

Output

txt files with one gene names per line

Documentation ¶

Overview ¶

Package dbgenes generates a list of genes in sequence database

Index ¶

func List(fileOptions map[string]interface{})

Constants ¶

This section is empty.

Variables ¶

This section is empty.

Functions ¶

func List ¶

func List(fileOptions map[string]interface{})

List reads FASTA database and outputs gene names.

Types ¶

This section is empty.

Source Files ¶

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README ¶

Module name: analysis-dbgenes

Example file formats

Output

Documentation ¶

Overview ¶

Index ¶

Constants ¶

Variables ¶

Functions ¶

func List ¶

Types ¶

Source Files ¶

Module name: `analysis-dbgenes`