README
¶
Module name: interaction-rankaverage
Calculates the average bait interaction rank for a list of preys.
| parameters | definition | default |
|---|---|---|
| fdr | FDR threshold | 0.01 |
| outFile | output file | prey-rank-average.txt |
| preys | list of preys | |
| saint | SAINT file |
Example file formats
preys
Must have a header, with first column having gene names.
gene
preyA
preyB
preyC
Output
prey-rank-average.txt
prey mean sd interaction ranks
preyA 3.5 0.707 3,4
preyA interacted with two baits, and was the 3 and 4th best prey for those baits after control-subtracting and length adjusting spectral counts
Documentation
¶
Overview ¶
Package rankaverage calculates the average interaction ranks for supplied prey list
Index ¶
Constants ¶
This section is empty.
Variables ¶
This section is empty.
Functions ¶
func CalculateRankAverages ¶
func CalculateRankAverages(fileOptions map[string]interface{})
CalculateRankAverages calculates the average interaction rank for each prey in a supplied list.
Types ¶
This section is empty.
Source Files
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