localization

package

v0.0.0-...-40008dc Latest Latest Go to latest Published: Jun 11, 2022 License: MIT Imports: 8 Imported by: 0

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func Prey(filename string) map[string]map[string]string

Prey reads a list of assigned localizations for preys.

type CompartmentSummary struct {
	DisplayTerms []string
	GOid         []string
	GOterms      []string
	IC           []float64
}

CompartmentSummary contains information about each NMF/SAFE compartment.

type ExpectedLocalization struct {
	GoID  []string
	ID    int
	Terms []string
}

ExpectedLocalization contains the ID and localization terms for a bait

type ExpectedLocalizations map[string]ExpectedLocalization

ExpectedLocalizations is a map of bait name to ID, GO ID and localization terms.

func Expected(filename string) ExpectedLocalizations

Expected reads a list of expected localizations

type Summary map[int]CompartmentSummary

Summary contains domain/rank level information.

func SummaryFile(filename string) Summary

SummaryFile reads an NMF or SAFE summary file.