nmf

package

v0.0.0-...-40008dc Latest Latest Go to latest Published: Jun 11, 2022 License: MIT Imports: 5 Imported by: 0

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Package nmf reads NMF output files and assesses localizations

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func ReadBasis(filename string) ([][]float64, []string, []string)

ReadBasis reads an NMF basis matrix.

type GeneLocalization struct {
	Compartment int
	Score       float64
}

GeneLocalization contains the NMF rank and score for a gene.

type NMFlocalization map[string]GeneLocalization

NMFlocalization contains localization information for all genes.

func Localization(filename string) NMFlocalization

Localization reads NMF rank localizations and scores.