subset

package
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 Go to latest Published: Jun 11, 2022 License: MIT Imports: 12 Imported by: 0

README

Module name: preyprey-subset

Subset a ProHits-viz interactive file to grab a cluster

parameters definition default
genes list of gene names that identify the cluster
heatmap .tsv file from ProHits-viz
outFile output list of gene names cluster.tsv

Example file formats

genes
WDR3
NOP56
DKC1
NOLC1
TCOF1
URB1
DHX33
TRMT1L
heatmap
row	column	value	params
SNAP29	SNAP29	1	{"type": "heatmap", "kind": "Prey vs prey", "xAxis": "Prey", "yAxis": "Prey", "filterType": 0, "abundance": "Correlation - Spec"}
SNAP29	PALD1	0.571787038973909	
SNAP29	APBB1	0.621831039504651	
SNAP29	EHBP1	0.619991568749013	
SNAP29	KCNB2	0.392832468690144	
SNAP29	UBA52	0.557246514867496	
SNAP29	VANGL2	0.59688567365931
Output
  • tsv file for input to ProHits-viz viewer

Documentation

Overview

Package subset gets a cluster from a prey-prey interactive file.

Index

Constants

This section is empty.

Variables

This section is empty.

Functions

func Heatmap 

func Heatmap(fileOptions map[string]interface{})

Heatmap takes a prey-prey interactive file for ProHits-viz and subsets a cluster based on an input list of genes.

Types

This section is empty.

Source Files

View all Source files

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