hierarchical

package

v1.0.0-alpha Latest Latest Go to latest Published: Feb 18, 2021 License: BSD-3-Clause, MIT Imports: 22 Imported by: 0

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Repository

github.com/knightjdr/prohits-viz-analysis

Documentation ¶

Overview ¶

Package hierarchical clusters data for dot plots.

Index ¶

func Cluster(analysis *types.Analysis)
func CreateCytoscape(fileData []map[string]string, data *SortedData, settings types.Settings)
func CreateDotplot(data *SortedData, clusteredData HclustData, settings types.Settings)
func CreateHeatmap(data *SortedData, clusteredData HclustData, settings types.Settings)
func CreatePNGs(data *SortedData, clusteredData HclustData, settings types.Settings)
func WriteDistance(data *SortedData, clusteredData HclustData, settings types.Settings)
func WriteMatrices(data *SortedData)
func WriteTrees(clusteredData HclustData, settings types.Settings)
type HclustData
type SortedData

Constants ¶

This section is empty.

Variables ¶

This section is empty.

Functions ¶

func Cluster ¶

func Cluster(analysis *types.Analysis)

Cluster data.

func CreateCytoscape ¶

func CreateCytoscape(fileData []map[string]string, data *SortedData, settings types.Settings)

CreateCytoscape files.

func CreateDotplot ¶

func CreateDotplot(data *SortedData, clusteredData HclustData, settings types.Settings)

CreateDotplot image.

func CreateHeatmap ¶

func CreateHeatmap(data *SortedData, clusteredData HclustData, settings types.Settings)

CreateHeatmap image.

func CreatePNGs ¶

func CreatePNGs(data *SortedData, clusteredData HclustData, settings types.Settings)

CreatePNGs as output format.

func WriteDistance ¶

func WriteDistance(data *SortedData, clusteredData HclustData, settings types.Settings)

WriteDistance images.

func WriteMatrices ¶

func WriteMatrices(data *SortedData)

WriteMatrices for transformed data.

func WriteTrees ¶

func WriteTrees(clusteredData HclustData, settings types.Settings)

WriteTrees for newick format.

Types ¶

type HclustData ¶

type HclustData struct {
	Dendrogram         map[string][]hclust.SubCluster
	Distance           map[string][][]float64
	NormalizedDistance map[string][][]float64
	Tree               map[string]hclust.TreeLayout
	UnsortedNames      map[string][]string
}

HclustData contains clustering information.

type SortedData ¶

type SortedData struct {
	ConditionDist [][]float64
	Matrices      *types.Matrices
	ReadoutDist   [][]float64
}

SortedData from clustering.

Source Files ¶

View all Source files

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