bamat

type BamAt ¶

type BamAt struct {
	*bam.Reader

	Refs map[string]*sam.Reference
	// contains filtered or unexported fields
}

BamAt holds bam index and the Bam Reader. Because BamAt holds the underlying os.File open, it is not safe to query from multiple go routines.

func New(path string) (*BamAt, error)

func (b *BamAt) Close() error

func (b *BamAt) Query(chrom string, start int, end int) (*bam.Iterator, error)