SeqOps

package
v0.0.0-...-20a8c95 Latest Latest
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 Go to latest Published: Feb 6, 2024 License: MIT Imports: 10 Imported by: 1

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Index

Constants

This section is empty.

Variables

This section is empty.

Functions

func OHEncode 

func OHEncode(wg *sync.WaitGroup, in chan Sequence, lsp *SequenceCollection)

Types

type Sequence 

type Sequence struct {
	Header string  //contig id from fasta file
	Seq    string  // contig sequence
	OH     []uint8 // one-hot encoded sequence
}

func NewSequence 

func NewSequence() *Sequence

Create a new empty sequence struct.

func ReadFasta 

func ReadFasta(fname string) []Sequence

type SequenceCollection 

type SequenceCollection struct {
	sync.RWMutex
	Items []Sequence
}

func (*SequenceCollection) Append 

func (cs *SequenceCollection) Append(item Sequence)

func (*SequenceCollection) ToParquet 

func (sc *SequenceCollection) ToParquet(fname string)

Source Files

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