hotsub

hotsub

The simple batch job driver on AWS and GCP. (Azure, OpenStack are coming soon)

hotsub run \
  --script ./star-alignment.sh \
  --tasks ./star-alignment-tasks.csv \
  --image friend1ws/star-alignment \
  --aws-ec2-instance-type t2.2xlarge \
  --verbose

It will

• execute workflow described in star-alignment.sh
• for each samples specified in star-alignment.csv
• in friend1ws/star-alignment docker containers
• on EC2 instances of type t2.2xlarge

and automatically upload the output files to S3 and clean up EC2 instances after all.

See Documentation for more details.

Installation

Check Getting Started on GitHub Pages

Contact

To make it transparent, ask any question from this link.

https://github.com/otiai10/hotsub/issues