FastqCount

FastqCount

Fastq reads, bases, N Bases, Q20, Q30, GC summary with high performance

Usage:

$ FastqCount [-phred value] [-o out.tsv] <input1.fastq input2.fastq.gz>

output (tsv) header: Total reads Total bases N bases Q20 Q30 GC

note:

1. When input is -, read standard input;

2. "pigz -dc *.fastq.gz | FastqCount -" is recommended for gzipped file(s).

-o string: output summary to a tsv file, default: stdout

-phred int: set phred value (default 33)

Output example (tsv):