Documentation
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Index ¶
- func GetBearerToken() (string, error)
- type Repository
- func (fr Repository) CreateDataset() (*healthcare.Operation, error)
- func (fr Repository) CreateFHIRResource(resourceType string, payload map[string]interface{}, resource interface{}) error
- func (fr Repository) CreateFHIRStore() (*healthcare.FhirStore, error)
- func (fr Repository) DeleteFHIRResource(resourceType, fhirResourceID string) error
- func (fr Repository) FHIRHeaders() (http.Header, error)
- func (fr Repository) FHIRRestURL() string
- func (fr Repository) GetDataset() (*healthcare.Dataset, error)
- func (fr Repository) GetFHIRPatientAllData(fhirResourceID string) ([]byte, error)
- func (fr Repository) GetFHIRResource(resourceType, fhirResourceID string, resource interface{}) error
- func (fr Repository) GetFHIRStore() (*healthcare.FhirStore, error)
- func (fr Repository) POSTRequest(resourceName string, path string, params url.Values, body io.Reader) ([]byte, error)
- func (fr Repository) PatchFHIRResource(resourceType, fhirResourceID string, payload map[string]interface{}, ...) error
- func (fr Repository) SearchFHIRResource(resourceType string, params map[string]interface{}, ...) (*domain.PagedFHIRResource, error)
- func (fr Repository) UpdateFHIRResource(resourceType, fhirResourceID string, payload map[string]interface{}, ...) error
Constants ¶
This section is empty.
Variables ¶
This section is empty.
Functions ¶
func GetBearerToken ¶
GetBearerToken logs in and gets a Google bearer auth token. The user referred to by `cloudhealthEmail` needs to have IAM permissions that allow them to read and write from the project's Cloud Healthcare base.
Types ¶
type Repository ¶
type Repository struct {
// contains filtered or unexported fields
}
Repository accesses and updates patient data that is stored on Healthcare FHIR repository
func NewFHIRRepository ¶
func NewFHIRRepository(_ context.Context, hsv *healthcare.Service, projectID, datasetID, datasetLocation, fhirStoreID string) *Repository
NewFHIRRepository initializes a FHIR repository
func (Repository) CreateDataset ¶
func (fr Repository) CreateDataset() (*healthcare.Operation, error)
CreateDataset creates a dataset and returns it's name
func (Repository) CreateFHIRResource ¶
func (fr Repository) CreateFHIRResource(resourceType string, payload map[string]interface{}, resource interface{}) error
CreateFHIRResource creates an FHIR resource.
The payload should be the result of marshalling a resource to JSON
func (Repository) CreateFHIRStore ¶
func (fr Repository) CreateFHIRStore() (*healthcare.FhirStore, error)
CreateFHIRStore creates a FHIR store.
func (Repository) DeleteFHIRResource ¶
func (fr Repository) DeleteFHIRResource(resourceType, fhirResourceID string) error
DeleteFHIRResource deletes an FHIR resource.
func (Repository) FHIRHeaders ¶
func (fr Repository) FHIRHeaders() (http.Header, error)
FHIRHeaders composes suitable FHIR headers, with authentication and content type already set
func (Repository) FHIRRestURL ¶
func (fr Repository) FHIRRestURL() string
FHIRRestURL composes a FHIR REST URL for manual calls to the FHIR REST API
func (Repository) GetDataset ¶
func (fr Repository) GetDataset() (*healthcare.Dataset, error)
GetDataset gets a dataset.
func (Repository) GetFHIRPatientAllData ¶
func (fr Repository) GetFHIRPatientAllData(fhirResourceID string) ([]byte, error)
GetFHIRPatientAllData gets all resources associated with a particular patient compartment.
func (Repository) GetFHIRResource ¶
func (fr Repository) GetFHIRResource(resourceType, fhirResourceID string, resource interface{}) error
GetFHIRResource gets an FHIR resource.
func (Repository) GetFHIRStore ¶
func (fr Repository) GetFHIRStore() (*healthcare.FhirStore, error)
GetFHIRStore gets an FHIR store.
func (Repository) POSTRequest ¶
func (fr Repository) POSTRequest( resourceName string, path string, params url.Values, body io.Reader) ([]byte, error)
POSTRequest is used to manually compose POST requests to the FHIR service
- `resourceName` is a FHIR resource name e.g "Patient" - `path` is a sub-path e.g `_search` under a resource - `params` should be query params, sent as `url.Values`
func (Repository) PatchFHIRResource ¶
func (fr Repository) PatchFHIRResource( resourceType, fhirResourceID string, payload map[string]interface{}, resource interface{}) error
PatchFHIRResource patches a FHIR resource. The payload is an instance of domain.FHIR<Resource>Input converted to a map[string]interface{} e.g. domain.FHIRPatientInput
This function first converts the payload to a JSON patch document that follows guidance on Patch from the FHIR standard. See:
patches := []map[string]interface{}{
{
"op": "replace",
"path": "/<fieldName>",
"value": newValue,
},
}
func (Repository) SearchFHIRResource ¶
func (fr Repository) SearchFHIRResource(resourceType string, params map[string]interface{}, tenant dto.TenantIdentifiers, pagination dto.Pagination) (*domain.PagedFHIRResource, error)
SearchFHIRResource ...
func (Repository) UpdateFHIRResource ¶
func (fr Repository) UpdateFHIRResource( resourceType, fhirResourceID string, payload map[string]interface{}, resource interface{}) error
UpdateFHIRResource updates the entire contents of a resource.
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