bug

BUG

Bioinformatic utilities in Go

Allelespecificexp

An oversimplified method to find allele specific expression in a normalized expression table and pedigree information

Usage: allelespecificexp -exp table.tsv -group "M M M F F F 1 1 1 2 2 2 3 3 3"

M marks the column of the mother RNA expression.

F marks the column of the father RNA expression.

Numbers marks the offsprings.

Replicates should have similar group ids.

Fastagrep

Using regular expression to find fasta records

Fastasubsample

Create a smaller random subset of a fasta file

FastaSplit

Split a multifasta into small, (roughly) equal proportions. Do not split sequences.

hmm

Simple HMM framework. Right now it is just a test framework

FastqFilt

Filter fastq file by read id

RingRing

Circular RNA finding tool

AnnoGraph

Scaffolding using a GFF annotation

SimVCF

Create simulated VCF file with two parents and siblings and simulate recombination events

SimHap

Create mother and father haplotype references

SimCirc

Create simulated reads came from circular RNA sample

MisAs

Find misassemblies using soft and hard clipped long reads