minimizer

package
v0.0.0-...-cbd5ca3 Latest Latest
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Published: May 25, 2023 License: MIT Imports: 3 Imported by: 0

Documentation

Overview

Package minimizer takes a sequence and finds the minimizers (for w consecutive k-mers) NOTE: currently it uses mapset to store the minimizers - this is unordered, which is fine for HULK but the minimizer sketch isn't that useful for anything else yet

Index

Constants

This section is empty.

Variables

This section is empty.

Functions

func NewMinimizerSketch

func NewMinimizerSketch(k, w uint, seq []byte) (*minimizerSketch, error)

NewMinimizerSketch is the constructor for a minimizerSketch

Types

This section is empty.

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