kaamer

kAAmer

kAAmer is a Go package that provides the tools to produce and query a kmerized protein database.

It provides fast protein and translated nucleotide searches over a protein database while lacking the sensitivity of alignment when it comes to find distant homology.

It is based on LSM-tree key value (KV) stores (badger) which provides very efficient write and lookup workloads with modern hardware, especially solid state drive (SSD).

Documentation

https://zorino.github.io/kaamer/