converter

func ConvertToBAM ¶

func ConvertToBAM(bamPath string, provider bamprovider.Provider) error

ConvertToBAM copies "provider" to a BAM file. Existing contents of "bamPath", if any, are destroyed.

func ConvertToPAM ¶

func ConvertToPAM(opts pam.WriteOpts, pamPath, bamPath, baiPath string, bytesPerShard int64) error

ConvertToPAM copies BAM to PAM.

bytesPerShard is specified in term of the input BAM file. For example, if you have a 100GB BAM file and set bytesPerShard to 20GB, this function will create roughly five (=100/20) PAM shards.